Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L19
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...    89   1e-18
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    35   0.030
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      35   0.030
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    35   0.030
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z46794-10|CAH04745.1|  417|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical
           protein C06G3.9 protein.
          Length = 735

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 39/91 (42%), Positives = 60/91 (65%)
 Frame = +3

Query: 129 SDWDEIKRLAADFQKAQLSSTSQRLSERNCIEIVTKLIEQKLLDVIFTTDGKEYLTSQQL 308
           + W +I++LA+D Q+ QLS +S++LSE NCIE++ KLI    +DV++T DG  Y+T   L
Sbjct: 2   TSWADIQKLASDLQRVQLSQSSKKLSEVNCIEVLQKLIASHRIDVVYTRDGHSYVTKNHL 61

Query: 309 IREIKDELFVHGGRINTVDVAKEFHVDLNQI 401
             EIK+E    GGR +  D+A   ++D + I
Sbjct: 62  ETEIKNECIAAGGRASLTDIAVALNIDFDHI 92


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 34.7 bits (76), Expect = 0.030
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
 Frame = +3

Query: 126 SSDWDEIKRLAADFQKAQLSSTSQRLSERNCIEIVTKLIEQKLLDVIFTTD-GKEYLTSQ 302
           SS    +K L + FQK Q S T+Q +     +  V  L+E  +L++I  T   KE+    
Sbjct: 360 SSILGRVKALNSVFQKFQ-SGTAQLIHWECFVSTVNALVE--ILNIIRQTPISKEFPVES 416

Query: 303 QLIREIKDELFVHGGRINTVDVAKEFHVD-LNQINNHVSEI 422
            L+RE+ +   + G  IN  +   +  V  +N I+  + EI
Sbjct: 417 DLLREVSEIAVIAGSIINFAESKIQGRVTVMNGIDEELDEI 457


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 34.7 bits (76), Expect = 0.030
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
 Frame = +3

Query: 126 SSDWDEIKRLAADFQKAQLSSTSQRLSERNCIEIVTKLIEQKLLDVIFTTD-GKEYLTSQ 302
           SS    +K L + FQK Q S T+Q +     +  V  L+E  +L++I  T   KE+    
Sbjct: 360 SSILGRVKALNSVFQKFQ-SGTAQLIHWECFVSTVNALVE--ILNIIRQTPISKEFPVES 416

Query: 303 QLIREIKDELFVHGGRINTVDVAKEFHVD-LNQINNHVSEI 422
            L+RE+ +   + G  IN  +   +  V  +N I+  + EI
Sbjct: 417 DLLREVSEIAVIAGSIINFAESKIQGRVTVMNGIDEELDEI 457


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 34.7 bits (76), Expect = 0.030
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
 Frame = +3

Query: 126 SSDWDEIKRLAADFQKAQLSSTSQRLSERNCIEIVTKLIEQKLLDVIFTTD-GKEYLTSQ 302
           SS    +K L + FQK Q S T+Q +     +  V  L+E  +L++I  T   KE+    
Sbjct: 360 SSILGRVKALNSVFQKFQ-SGTAQLIHWECFVSTVNALVE--ILNIIRQTPISKEFPVES 416

Query: 303 QLIREIKDELFVHGGRINTVDVAKEFHVD-LNQINNHVSEI 422
            L+RE+ +   + G  IN  +   +  V  +N I+  + EI
Sbjct: 417 DLLREVSEIAVIAGSIINFAESKIQGRVTVMNGIDEELDEI 457


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 186 STSQRLSERNCIEIVTKLIEQKLLDVIF 269
           S+S  LSE+N  E  TKLI + L +V F
Sbjct: 429 SSSSELSEKNLDEPTTKLINKNLENVAF 456


>Z46794-10|CAH04745.1|  417|Caenorhabditis elegans Hypothetical
           protein R06F6.12 protein.
          Length = 417

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
 Frame = +3

Query: 138 DEIKRLAADFQKAQLSSTSQRLSERNCIEIVTK--LIEQKLLDVIFTTDG----KEYLTS 299
           +++  + A  Q+ Q     Q  +E   IE  +   ++  ++++  F  DG    +EY  +
Sbjct: 109 EQLNIVVAISQQRQAKQNEQEHNEEVVIEDGSHHHMVHHEMIENQFEGDGNGPEEEYDGN 168

Query: 300 QQLIREIKDELFVHGGRINTVDVAKEFHVDLNQINN 407
            Q+I      +  + G +N     K+F+V  ++I N
Sbjct: 169 GQIIDNAMHIILTNDGGVNITSKQKQFYVSPSEIAN 204


>Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical
           protein T26H8.4 protein.
          Length = 561

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -2

Query: 397 WLRST*NSLATSTVFIRPPCTXXXXXXXXXSC*EVKYSLPSVVNITSSNFCS 242
           ++  T   + +ST+F    CT              K++LP   N TSSNF S
Sbjct: 216 YILRTIGKINSSTIFFICLCTLPEYQKVVQDVFPKKFTLPLFKNFTSSNFSS 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,647,709
Number of Sequences: 27780
Number of extensions: 151242
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)