Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L19
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   0.85 
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   2.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 330 LFVHGGRINTVDVAKEFHVDLNQINNHVSEIVKGI 434
           LF+ GG  +     K F   LN++N +++ + KG+
Sbjct: 33  LFMIGGVFSNNKSKKYFEQTLNELNFNLNYVNKGV 67


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 434 YSFYNFRHMIVNLVEINMKLFSNINSV 354
           Y++ N+ +   N    N KL+ NIN +
Sbjct: 89  YNYSNYNNYNNNYNNYNKKLYYNINYI 115


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 357 TVDVAKEFHVDLNQINNHVSEI 422
           T ++A++ HV    I NH+ ++
Sbjct: 86  TREIAEKLHVSHTCIENHLKQL 107


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 204 SERNCIEIVTKLIEQKLLDVIFTTDGKEYLTSQQLIREI 320
           S+ N I  ++KL+ ++    I+T+     LT  Q +  +
Sbjct: 510 SKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVNQTVNPV 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,826
Number of Sequences: 438
Number of extensions: 1835
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)