Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L14
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    26   5.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    25   6.7  
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar...    25   8.8  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 452 SGEHYR*KDICRSNFYETRR*KLTHESSYYDSD 354
           SG++ + K IC   FY  R+ ++ +    YD D
Sbjct: 49  SGDYNQFKTICPQPFYNNRKNQVRNPDFKYDED 81


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 600 NDSR*HPPQSRTASDN 553
           ND R +PPQ+RTA  N
Sbjct: 116 NDRRNYPPQNRTAKPN 131


>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
          factor|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 48 QVLHITRIILYWSTSC 1
          QV+HIT ++  WS +C
Sbjct: 27 QVIHITDLVRVWSCTC 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,861
Number of Sequences: 5004
Number of extensions: 43518
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)