Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L14
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    27   0.11 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    27   0.11 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.2  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 575 NRERHQIIIHRNGNEPEKKREFKMYRLDKK*QSVRRIDKSKSGE 444
           NR+R+     R  N  + +RE++ YR   K +S  R ++ +S E
Sbjct: 34  NRKRNSRSREREQNSYKNEREYRKYRETSKERSRDRTERERSRE 77


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 575 NRERHQIIIHRNGNEPEKKREFKMYRLDKK*QSVRRIDKSKSGE 444
           NR+R+     R  N  + +RE++ YR   K +S  R ++ +S E
Sbjct: 34  NRKRNSRSREREQNSYKNEREYRKYRETSKERSRDRAERERSRE 77


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 575 NRERHQIIIHRNGNEPEKKREFKMYRLDKK*QSVRRIDKSKSGE 444
           +RER+     R     + +RE++ Y    K +S  R ++ +S E
Sbjct: 268 SRERYSRSREREQKSYKNEREYRKYGETSKERSRDRTERERSKE 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,942
Number of Sequences: 438
Number of extensions: 2973
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)