Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L13
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    32   0.066
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.6  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 31.9 bits (69), Expect = 0.066
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +3

Query: 204 PSLKAQADFSIG*VGSNPCPLMWNLATLPTVPASYIILRG---STQDYRGSSRIEKQNYN 374
           PSL  + DF++G +  NP  +++     P+    Y++L G   S +D RGS+R +   +N
Sbjct: 646 PSLLLKLDFAVGWIHLNPDQVVYE-KNDPS-DCVYVVLNGRLRSIEDERGSARTQVDYFN 703

Query: 375 LYIK 386
            Y K
Sbjct: 704 EYGK 707


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 555 NKINSIYSNKLYYIDY 508
           NKI+ I SNKL Y+ Y
Sbjct: 496 NKIHGIQSNKLMYVRY 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,078
Number of Sequences: 5004
Number of extensions: 50432
Number of successful extensions: 99
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)