Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L13
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    30   0.99 
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical ...    29   3.0  

>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
           protein F36H2.3 protein.
          Length = 1388

 Score = 30.3 bits (65), Expect = 0.99
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 459 IMKLSENALDISYCEKSSQFSVNNILYIGYNFVFQ-----SYLILCNLGLTLSK*YMMLA 295
           I +LSE+A   + C   +  +  N+LY+  N   Q     S  ++CNLG +LS     L 
Sbjct: 410 IRRLSESASTGAVCAAIANPANGNLLYMQSNPTVQYSSGTSAYLMCNLGYSLSGSVSTLC 469

Query: 294 QWAVWPDS 271
              VW  S
Sbjct: 470 SNGVWSPS 477


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
           protein T19D12.4b protein.
          Length = 1015

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 201 NIMRKI*HGGRAISNNIHLVASTLKFENLLSNTYRCVLAVSLENKSLGLVYLP 43
           +I +K         N+ +++ +T  F N LS  +  VLA S+ N   G  Y+P
Sbjct: 222 DISKKFADNADQFKNDFNILLNTATFYNALSFKFADVLAQSIANFKTGRQYVP 274


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
           protein T19D12.4a protein.
          Length = 1028

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 201 NIMRKI*HGGRAISNNIHLVASTLKFENLLSNTYRCVLAVSLENKSLGLVYLP 43
           +I +K         N+ +++ +T  F N LS  +  VLA S+ N   G  Y+P
Sbjct: 235 DISKKFADNADQFKNDFNILLNTATFYNALSFKFADVLAQSIANFKTGRQYVP 287


>AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical
           protein K06H6.3 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 302 CWHSGQCGQIPHQWTWV 252
           CW S   G I H WTW+
Sbjct: 204 CWTSAFAGNIFHGWTWI 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,952,498
Number of Sequences: 27780
Number of extensions: 273084
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)