Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L11
         (592 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.27 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.48 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   1.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.5  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   5.9  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   5.9  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 206 PILGAKEDVAPTSPPT 159
           PIL  K  V+PT+PPT
Sbjct: 85  PILAEKVSVSPTTPPT 100


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.48
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = +3

Query: 414 KYHNGRCHWHCQDNASSFNGTLPLRLSKRNPW----HSTICW 527
           K  NGRC   C   A  F+G     L   NPW     ST CW
Sbjct: 496 KRGNGRCDEECNTYACEFDGN-DCSLG-INPWANCTASTRCW 535


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 411 WKYHNGRCHWHCQDNASS 464
           W Y+  R H HC   + S
Sbjct: 84  WVYYESRAHIHCSVKSES 101


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 257 VALAMSSPTFFGERPRGPILGAKEDVAPTSPPT 159
           + + +S+PT FG R     L    DV P +  T
Sbjct: 166 IGVQISAPTIFGARHGLETLSQLMDVYPNNDGT 198


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 431 SSIVIFPLCLMFFCFL 384
           S+ +IF + L+F+C L
Sbjct: 217 SAFIIFTIHLLFYCVL 232


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 179 LRPPWLLKSVPLVSPQKRLVMTSLK 253
           +RPP L  + P+ +PQ ++  T  K
Sbjct: 101 IRPPILHDTQPMCNPQLQVPRTFFK 125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,911
Number of Sequences: 336
Number of extensions: 3021
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)