Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_L11
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 238 5e-64
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 238 5e-64
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.5
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 3.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.7
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 8.3
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 8.3
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 238 bits (582), Expect = 5e-64
Identities = 105/160 (65%), Positives = 139/160 (86%)
Frame = +1
Query: 109 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 288
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 289 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPRS 468
+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN+ H+GN++++++I +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 469 MARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 588
+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEI 160
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 238 bits (582), Expect = 5e-64
Identities = 105/160 (65%), Positives = 139/160 (86%)
Frame = +1
Query: 109 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 288
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 289 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPRS 468
+L +QNRQA +SVVPSA+AL+I+ALKEP RDRKK KN+ H+GN++++++I +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 469 MARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 588
+A+ LSG+VKEILGTA SVGCTV+G+ PHD+ +I++G +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEI 160
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 203 ILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPM 54
I+ + ++ T+ PTHL L SN+ NNK+ N+SKP+
Sbjct: 449 IMDLTQPISSTNAPTHLNEDDLNQFTSNISSSSKPRKDNNKTA-NSSKPI 497
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 469 LNEDALSWQCQ*HLPL*YFHCV*CSSAS 386
L EDA +WQCQ YF V CS S
Sbjct: 652 LMEDAENWQCQHCKAFSYFSQVACSCKS 679
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Frame = -1
Query: 559 CHGGPCPP--QCIQQIVLC 509
CH GPCPP +++ LC
Sbjct: 298 CHPGPCPPCTATVEKFCLC 316
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 128 GSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGVQPSK 21
GS + G+VL+N K + LD+ VQ K
Sbjct: 92 GSQVAGLVLSNRSGLKGREPKKSQLGLDVLAVQKKK 127
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 141 NRQLKMCWWRSRCYVLLGS*NRSPWSLPKK 230
NR C R Y+ G NRSPW++ +K
Sbjct: 286 NRLPMHCRDHWRDYIQPGEINRSPWTIQEK 315
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 8.3
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Frame = +1
Query: 169 EVGATSSLAPKIGPLGLSPKK---VGDDIAKATSDWKGLKITVQLIVQNRQ--AQIS-VV 330
E+ A +++ P++ P +PKK + ++ ++ ++ + + + N + A S V
Sbjct: 155 EIAAPANIEPEVAPTTKTPKKRAALSNEEKQSLKKFQSAMLPMLDNISNHRFGAPFSHPV 214
Query: 331 PSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPRSMARYLSGS 492
A +L P+D + KN+ GNIT D + +++R + + +GS
Sbjct: 215 NRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDEL-YREVLRIFANCKMYNGS 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,621
Number of Sequences: 5004
Number of extensions: 47303
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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