Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_L11
(592 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0416 + 28791512-28792012 234 4e-62
04_04_1026 + 30214437-30214937 231 4e-61
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 30 1.6
12_01_0873 - 8341660-8341899,8342876-8343020,8343123-8343339,834... 29 3.7
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 3.7
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 3.7
06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627 28 4.8
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 28 4.8
08_01_0500 + 4338111-4338195,4339910-4340042,4340116-4340187,434... 28 6.4
06_03_0784 - 24557089-24557198,24557296-24560725 28 6.4
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 28 6.4
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 27 8.5
07_03_0468 - 18484386-18486377,18486741-18486827 27 8.5
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 8.5
04_04_0453 - 25346114-25346214,25346600-25346699,25346901-253469... 27 8.5
03_05_0930 + 28908216-28908587 27 8.5
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 27 8.5
>02_05_0416 + 28791512-28792012
Length = 166
Score = 234 bits (572), Expect = 4e-62
Identities = 109/159 (68%), Positives = 137/159 (86%), Gaps = 1/159 (0%)
Frame = +1
Query: 109 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 285
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 286 VQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPR 465
V+L VQNRQA++SVVPSAAAL+I+ALKEP RDRKK KNIKH+GNI+++DVI IA++MRPR
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120
Query: 466 SMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSG 582
SMA+ ++G+VKEILGT SVGCTV+G+ P D+ +I+ G
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDG 159
>04_04_1026 + 30214437-30214937
Length = 166
Score = 231 bits (564), Expect = 4e-61
Identities = 109/159 (68%), Positives = 136/159 (85%), Gaps = 1/159 (0%)
Frame = +1
Query: 109 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 285
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 286 VQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPR 465
V+L VQNRQA++SVVPSAAAL+I+ALKEP RDRKK KNIKH+GNI+++DVI IA+IMR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 466 SMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSG 582
SMA+ ++G+VKEILGT SVGCTV+G+ P D+ +I+ G
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDG 159
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 245 MSSPTFFGERPR-GPILGAKEDVAPTSPPT 159
MS+P FFG+ P+ P +GA + T PPT
Sbjct: 444 MSAPPFFGQLPQVQPQIGATAALGGTQPPT 473
>12_01_0873 -
8341660-8341899,8342876-8343020,8343123-8343339,
8343427-8343703,8346682-8346849
Length = 348
Score = 28.7 bits (61), Expect = 3.7
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Frame = +1
Query: 130 NEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLIVQNR 309
+E IV+L + S++ PKIG GLS + D I + S G +I
Sbjct: 175 SEKPIVHLDLKPDNILLDSNMNPKIGDFGLSEELQDDYINASVSGTLGYMPPEYIIEGTV 234
Query: 310 QAQISVVPSAAALI--IRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPR 465
+ V L+ I + E R + Q +I+ N+ + G+ K+ PR
Sbjct: 235 SLKNDVYGFGVTLLETISGMSESGRGARHQASIEWAWNVRLSG--GMNKLFDPR 286
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 265 WKGLKITVQLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQ 393
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -3
Query: 212 RGPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNLDIKGV 33
R P K +P+ P + + S + L +V + NN + ++SKP+ +GV
Sbjct: 80 RAPAPSPKPSPSPSPSP---RRSTSASPSATLSSLVSRTFSNNAASSSSSKPLPSLFRGV 136
Query: 32 QPSKR 18
+PS +
Sbjct: 137 RPSPK 141
>06_03_0677 - 23440273-23440749,23440824-23440985,23442007-23442627
Length = 419
Score = 28.3 bits (60), Expect = 4.8
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Frame = -3
Query: 356 LMISAAAEGTTEICACLFCTINWTVILR-PFQSLVALAMSSP-TFFGERPRGPILGAKED 183
LM+ + + TE+ + T WT + R F +++ +A S F L K D
Sbjct: 164 LMVGSNGDSMTEVFQSIMKTEGWTGLFRGNFVNVIRVAPSKAIELFAFDTAKKFLTPKAD 223
Query: 182 VAPTSP-PTHLKLTILISLGSNLG----GIVLTNYCNNKSLYNN 66
+P +P P L L + S L ++ T K +YNN
Sbjct: 224 ESPKTPFPPSLIAGALAGVSSTLCTYPLELIKTRLTIEKDVYNN 267
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -3
Query: 209 GPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 48
G + + P PP + I+LGS G L ++C+ K ++ + K N+
Sbjct: 386 GSVASRLRERQPNDPPLEWQTRTRIALGSARGLSYLHDHCDPKIIHRDVKAANI 439
>08_01_0500 +
4338111-4338195,4339910-4340042,4340116-4340187,
4340524-4340587,4341383-4341459,4341586-4341657,
4341741-4341853,4341995-4342126,4342204-4342545,
4342628-4343022,4343293-4343603,4343967-4344066
Length = 631
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -3
Query: 209 GPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 48
G + + P+ PP + I+LGS G L ++C+ K ++ + K N+
Sbjct: 356 GSVASRLRERPPSEPPLDWRTRRRIALGSARGLSYLHDHCDPKIIHRDVKAANI 409
>06_03_0784 - 24557089-24557198,24557296-24560725
Length = 1179
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 578 LLISSMMSWGALPSTVHPTDCAVPRISF 495
LL + M+ W S +HPTD A SF
Sbjct: 1150 LLENDMIEWSTQTSLLHPTDSAASSSSF 1177
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 352 IRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPRSMARYLS 486
+R +PPRDR+ K + N N+T + A ++ P S R LS
Sbjct: 64 VRQCSQPPRDRRVTKLVLENLNLT---GVLTATLLAPLSELRVLS 105
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -3
Query: 209 GPILGAKEDVAPTSPPTHLKLTILISLGSNLGGIVLTNYCNNKSLYNNSKPMNL 48
G + + P+ PP + I+ GS G L ++CN K ++ + K N+
Sbjct: 1400 GSVASRLRERPPSEPPLDWQTRRRIAAGSARGLSYLHDHCNPKIIHRDVKAANI 1453
>07_03_0468 - 18484386-18486377,18486741-18486827
Length = 692
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +1
Query: 397 NIKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEIL-GTAQS---VGCTVEG--RAPHD 558
NI+ + + ++G K + R+++ +L KE L G + S C + G A HD
Sbjct: 385 NIRPSEKALAKFIVGCLKASKVRALSSFLITLHKEDLKGPSHSDVISACILMGWLHAAHD 444
Query: 559 IIDDINSGAL 588
I+DD+ S +
Sbjct: 445 ILDDLESAEI 454
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 148 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 249
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>04_04_0453 -
25346114-25346214,25346600-25346699,25346901-25346962,
25347053-25347186,25347320-25347408,25347667-25347696
Length = 171
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 318 LRLSVLHYQLDRDLETLPVTSGFS 247
L+ S+LHY +++LE L +GFS
Sbjct: 129 LKSSILHYLTEKELEELAKEAGFS 152
>03_05_0930 + 28908216-28908587
Length = 123
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 553 GGPCPPQCIQQIVLCQGFL-LLSLRGNVPLNE 461
G PCP + + +C L LL L+ NVP ++
Sbjct: 36 GNPCPTSALADLKVCADVLVLLKLKINVPASQ 67
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 215 PRGPILGAKEDVAPTSPPTHLKLTI 141
PR P + A + V PT P HL L +
Sbjct: 408 PRMPFMAAPQPVVPTPPVNHLDLGV 432
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,782,775
Number of Sequences: 37544
Number of extensions: 346793
Number of successful extensions: 1051
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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