Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L11
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   260   5e-70
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    71   5e-13
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    28   4.3  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    27   7.5  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  260 bits (637), Expect = 5e-70
 Identities = 117/160 (73%), Positives = 143/160 (89%)
 Frame = +1

Query: 109 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 288
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 289 QLIVQNRQAQISVVPSAAALIIRALKEPPRDRKKQKNIKHNGNITMEDVIGIAKIMRPRS 468
           +L +QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG++T++ +I IA+IMRPRS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 469 MARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 588
           MA+ L G+VKEILGTAQSVGCT++G+ PHDII+ I +G +
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEI 160


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 31/45 (68%), Positives = 39/45 (86%)
 Frame = +1

Query: 454 MRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDIIDDINSGAL 588
           MRPRSMA+ L G+VKEILGTAQSVGCT++G+ PHDII+ I +G +
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEI 45


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -3

Query: 425 IVIFPLCLMFFCFLRS 378
           +VIF +CL+ FCFLR+
Sbjct: 613 LVIFLMCLLVFCFLRN 628


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 559 CHGGPCPPQCIQQIVLCQ 506
           CH GPCPP  +   V+C+
Sbjct: 513 CHEGPCPPCNLNTSVICR 530


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
 Frame = -3

Query: 248 AMSSPTFFGERPRGPILGAKEDVAPTSPPTHL--KLTILISLGSNLGGIVLTNYCNNKSL 75
           A S P     +   P   + +D  PTSPP  +   LT  +    +    +  +Y     L
Sbjct: 630 ATSQPAPLPCKSANPTEDSSQDAPPTSPPPRISDSLTAFLEAQQDFNDYIDAHYKEKTQL 689

Query: 74  YNNSKPMNLDIKGVQPSK 21
                 +NL+I G+ P +
Sbjct: 690 LK----VNLNIHGMSPER 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,641,450
Number of Sequences: 27780
Number of extensions: 277176
Number of successful extensions: 687
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)