Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L10
         (542 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome s...    38   0.15 
UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=3...    38   0.20 
UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III; n=...    36   0.60 
UniRef50_UPI0001553738 Cluster: PREDICTED: hypothetical protein;...    35   1.1  
UniRef50_A7BLK5 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_UPI0000EBC1B9 Cluster: PREDICTED: similar to translatio...    32   7.4  
UniRef50_Q6PUE8 Cluster: Erythrocyte membrane protein 1 var IT-I...    32   7.4  
UniRef50_O01700 Cluster: Putative uncharacterized protein dlk-1;...    32   9.8  
UniRef50_A5K6X5 Cluster: Putative uncharacterized protein; n=1; ...    32   9.8  

>UniRef50_Q4SP80 Cluster: Chromosome 15 SCAF14542, whole genome
           shotgun sequence; n=5; Euteleostomi|Rep: Chromosome 15
           SCAF14542, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 366

 Score = 37.9 bits (84), Expect = 0.15
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = -3

Query: 540 RRALKDIEEFYHTSISEMPSDVANLI 463
           +R L+DIE FY+T++ EMP +VA+LI
Sbjct: 341 KRVLRDIETFYNTTVEEMPMNVADLI 366


>UniRef50_Q14240 Cluster: Eukaryotic initiation factor 4A-II; n=37;
           Bilateria|Rep: Eukaryotic initiation factor 4A-II - Homo
           sapiens (Human)
          Length = 407

 Score = 37.5 bits (83), Expect = 0.20
 Identities = 15/26 (57%), Positives = 22/26 (84%)
 Frame = -3

Query: 540 RRALKDIEEFYHTSISEMPSDVANLI 463
           +R L+DIE FY+T++ EMP +VA+LI
Sbjct: 382 KRILRDIETFYNTTVEEMPMNVADLI 407


>UniRef50_P38919 Cluster: Eukaryotic initiation factor 4A-III;
           n=366; root|Rep: Eukaryotic initiation factor 4A-III -
           Homo sapiens (Human)
          Length = 411

 Score = 35.9 bits (79), Expect = 0.60
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -3

Query: 537 RALKDIEEFYHTSISEMPSDVANLI 463
           R L+DIE++Y T I EMP +VA+LI
Sbjct: 387 RILRDIEQYYSTQIDEMPMNVADLI 411


>UniRef50_UPI0001553738 Cluster: PREDICTED: hypothetical protein;
           n=2; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 490

 Score = 35.1 bits (77), Expect = 1.1
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = -3

Query: 540 RRALKDIEEFYHTSISEMPSDVANLI 463
           +R L+DIE FY+T + EMP +V +LI
Sbjct: 465 KRILRDIETFYNTPVEEMPMNVGDLI 490


>UniRef50_A7BLK5 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 272

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 485 PVMWPTSSEVSTFIWSILCVLRSIAIFIRCVCVCIKGEPPKYLSLCRTLF 336
           P+ W   S +S FIW  +C L  I+I +   C  +     K  + CRT F
Sbjct: 204 PLTWGCHS-LSFFIWLNICQLYPISIGVSTSCTLVSEASDKTSACCRTTF 252


>UniRef50_UPI0000EBC1B9 Cluster: PREDICTED: similar to translation
           initiation factor eIF4A I; n=1; Bos taurus|Rep:
           PREDICTED: similar to translation initiation factor
           eIF4A I - Bos taurus
          Length = 127

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 540 RRALKDIEEFYHTSISEMPSDVANLI 463
           ++ L D E FYH ++ EMP  VA+LI
Sbjct: 102 KKNLYDTETFYHITVEEMPKTVADLI 127


>UniRef50_Q6PUE8 Cluster: Erythrocyte membrane protein 1 var IT-ICAM;
            n=7; Plasmodium falciparum|Rep: Erythrocyte membrane
            protein 1 var IT-ICAM - Plasmodium falciparum
          Length = 2553

 Score = 32.3 bits (70), Expect = 7.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 72   YNWKSYKYNCFSSSAFVIEIASPVPDETSTQTAE--RSARNGG 194
            YN K Y + C S +    E +SP PD  S+  A+   +A  GG
Sbjct: 1638 YNGKYYGWKCISGATTATETSSPSPDAASSPPADSGNTATTGG 1680


>UniRef50_O01700 Cluster: Putative uncharacterized protein dlk-1;
           n=4; Caenorhabditis|Rep: Putative uncharacterized
           protein dlk-1 - Caenorhabditis elegans
          Length = 928

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 415 IERRTQSIDQINVDTSDEVGHITGHFRNTSVIELLNILERSP 540
           +E RT ++ ++N     E+ H+  H R+ ++IE L +  +SP
Sbjct: 154 LENRTVAVKKVNQLKETEIKHLR-HLRHQNIIEFLGVCSKSP 194


>UniRef50_A5K6X5 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 1201

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 3   TRPRAVHLFSVLQKKKEQSPL-FMYNWKSY 89
           TRP A+ L + LQ+K E++ +  +Y+W+SY
Sbjct: 535 TRPTAMRLLTYLQRKNEKNQIECIYHWRSY 564


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,764,318
Number of Sequences: 1657284
Number of extensions: 8395924
Number of successful extensions: 24031
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24003
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)