Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L10
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    35   0.009
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    32   0.063
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   5.5  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    25   7.2  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    25   7.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   7.2  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   9.5  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 13/25 (52%), Positives = 21/25 (84%)
 Frame = -3

Query: 537 RALKDIEEFYHTSISEMPSDVANLI 463
           R +++IE+FY+T I EMP ++A+LI
Sbjct: 368 RMMREIEQFYNTHIEEMPMNIADLI 392


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 31.9 bits (69), Expect = 0.063
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 537 RALKDIEEFYHTSISEMPSDVANLI 463
           R L+DIE++Y T I EMP ++ +++
Sbjct: 370 RILRDIEQYYSTVIDEMPMNIGDMV 394


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 63   LFMYNWKSYKYNCFSSSAFVIEIASPVP 146
            LF  N+ SY+Y CFS   +++ I + +P
Sbjct: 3515 LFRKNF-SYQYACFSFITYILSINNRIP 3541


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 473  PTSSEVSTFIWSILCVLRSIA 411
            PTS   S   WSI+C LR +A
Sbjct: 1050 PTSGLDSQSAWSIVCFLRKLA 1070


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 142 TGEAISITKALEEKQLYL*LFQLYINNG 59
           TGE + + K L+E+ LY  L +LY N G
Sbjct: 156 TGEFLRVEKKLDEEALYQDLKELY-NEG 182


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 482 VMWPTSSEVSTFIWSILCVLRSIAIFIRCVCVCIKGE 372
           +++PTS  +S  +W+    L S+AI  +   +   GE
Sbjct: 107 LIYPTSYTISNILWTFSIWLESVAILPQLFMLQRSGE 143


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 21  HLFSVLQKKKEQSPLFMYNWKSYKYNCFSS 110
           HLFS +  ++  S     NW  Y  +C SS
Sbjct: 5   HLFSEVHFRRNASNPNQINWTRYWIDCLSS 34


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 542 TGERSRILRSSITLVFRKCPVMWPTSSEVSTFIWSIL 432
           TGE S+I  +++  V  K P M   ++ +  FI++++
Sbjct: 547 TGEESKIRMNAVRNVSVKAPSMQKVTNRIVIFIFALV 583


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 355 DRYLGGSPLIHTHTHLINIAIERRTQSIDQIN 450
           D+Y+G SP   +H H     ++ +T+S D+ N
Sbjct: 93  DQYIGRSPRPTSHRHAEEKEVDNKTKS-DETN 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,881
Number of Sequences: 5004
Number of extensions: 36180
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)