Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L10
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942...    36   0.021
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317...    36   0.021
02_01_0355 + 2558792-2558862,2558993-2559099,2559185-2559615,256...    31   0.59 
07_03_0584 - 19690474-19690589,19690763-19690909,19691068-196911...    30   1.0  
06_03_1284 - 28988287-28988922,28989335-28989765,28989850-289899...    30   1.4  
01_07_0194 - 41896831-41896895,41897377-41897440,41898074-418981...    27   7.3  
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526...    27   9.7  

>03_05_0052 -
           20293197-20293310,20293938-20294024,20294133-20294270,
           20295009-20295128,20295236-20295343,20296053-20296133,
           20296216-20296456,20297010-20297305
          Length = 394

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -3

Query: 537 RALKDIEEFYHTSISEMPSDVANLI 463
           R L+DIE++Y T I EMP +VA+LI
Sbjct: 370 RILRDIEQYYSTQIDEMPMNVADLI 394


>01_06_0020 +
           25630728-25631023,25631308-25631548,25631629-25631709,
           25632109-25632216,25632329-25632448,25632806-25632943,
           25633064-25633150,25633802-25633915
          Length = 394

 Score = 35.9 bits (79), Expect = 0.021
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = -3

Query: 537 RALKDIEEFYHTSISEMPSDVANLI 463
           R L+DIE++Y T I EMP +VA+LI
Sbjct: 370 RILRDIEQYYSTQIDEMPMNVADLI 394


>02_01_0355 +
           2558792-2558862,2558993-2559099,2559185-2559615,
           2560100-2560735
          Length = 414

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = -3

Query: 537 RALKDIEEFYHTSISEMPSDVANLI 463
           R L DI+ FY+ +I E+P++VA+L+
Sbjct: 390 RMLFDIQRFYNVTIEELPANVADLL 414


>07_03_0584 -
           19690474-19690589,19690763-19690909,19691068-19691116,
           19691240-19691365,19691473-19692651
          Length = 538

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 12  RAVHLFSVLQKKKEQSPLFMYNWKSYKYNCFSSSA 116
           +A+    VL+K K     + ++WKS+ Y C+++ A
Sbjct: 501 KALSCLQVLRKSKHDPLYYCFSWKSFHYVCWTAYA 535


>06_03_1284 -
           28988287-28988922,28989335-28989765,28989850-28989956,
           28990066-28990136
          Length = 414

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -3

Query: 537 RALKDIEEFYHTSISEMPSDVANLI 463
           R L DI+ FY+  I E+P++VA+L+
Sbjct: 390 RMLFDIQRFYNVVIEELPANVADLL 414


>01_07_0194 -
           41896831-41896895,41897377-41897440,41898074-41898195,
           41898304-41898433,41899659-41899751
          Length = 157

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 163 CVEVSSGTGEAISITKALEEK 101
           C+E+  G G+A+S+ K +E+K
Sbjct: 113 CLEIQPGWGQALSLKKTVEDK 133


>03_05_0834 -
           28051067-28051381,28051675-28052120,28052330-28052671,
           28053170-28053310,28053419-28053489,28053575-28053640,
           28053874-28054017,28054149-28054207,28054246-28054369,
           28054730-28054862,28055138-28055187,28055715-28055824,
           28057355-28057436,28057536-28057705,28057812-28058498,
           28058645-28058794,28058908-28059039,28059444-28059594,
           28060253-28060344,28062478-28062585
          Length = 1190

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 75  NWKSYKYNCFSSSAFVIEIASPVPDETSTQTAERSARNGGHPAE 206
           NW++  + CF       EIA+ + +ET + +   +   GG P +
Sbjct: 654 NWRASVFECFIFGGSCDEIATVILEETRSWSLPGNKITGGIPEQ 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,797,140
Number of Sequences: 37544
Number of extensions: 227127
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)