Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L09
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    80   2e-16
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    29   0.37 
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    29   0.37 
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    29   0.37 
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    29   0.37 
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    29   0.37 
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    29   0.37 
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    25   4.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.1  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 40/113 (35%), Positives = 54/113 (47%)
 Frame = +3

Query: 9   LDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFNEAT 188
           LD+  EDL    L+  + + A+SL   YPT+ S  HS+ N +KNL+A++  TE  F    
Sbjct: 202 LDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTE 261

Query: 189 TIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 347
             K ++ DPS FV                            ESD+DMGFGLFD
Sbjct: 262 QTKAFLADPSAFV--VAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESD+DMGFGLFD
Sbjct: 98  ESDEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESD+DMGFGLFD
Sbjct: 98  ESDEDMGFGLFD 109


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESD+DMGFGLFD
Sbjct: 99  ESDEDMGFGLFD 110


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 30  LREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFNEATTIKEYIK 209
           L +  LAG A+        G P    + H   +G  + +  A  + VDFN     +++++
Sbjct: 212 LYDPLLAGRASEMMSQFMNGQPVRVVSSHPRLSGLLDTINAAIGSHVDFNPNLRDEQWLR 271

Query: 210 D 212
           D
Sbjct: 272 D 272


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 42  FLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIA 155
           +L GV   +A    +  PT  S PH +  GF   + IA
Sbjct: 524 YLVGVPLQSATICVVSLPTEDSQPHVLHEGFLGEVCIA 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,135
Number of Sequences: 5004
Number of extensions: 20948
Number of successful extensions: 65
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)