Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L09
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171...   103   1e-22
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164...   102   1e-22
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160...   102   2e-22
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    31   0.65 
03_02_0966 + 12783515-12783901                                         30   0.86 
03_05_0947 - 29081007-29081047,29081670-29081958,29083044-290834...    29   2.6  
08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    28   3.5  
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     28   3.5  
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    28   3.5  
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           28   3.5  
04_01_0142 + 1640472-1640611,1641618-1641744,1642233-1642425,164...    28   4.6  
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600           28   4.6  

>08_01_0215 -
           1714224-1714364,1714795-1715187,1715279-1715377,
           1716248-1716316,1716408-1716665
          Length = 319

 Score =  103 bits (246), Expect = 1e-22
 Identities = 49/113 (43%), Positives = 64/113 (56%)
 Frame = +3

Query: 9   LDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFNEAT 188
           LD+  +DL EKF +GV+ VA++SL+I YPT+A+APH   NG+KN+LA+A  TE  +  A 
Sbjct: 207 LDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHAD 266

Query: 189 TIKEYIKDPSKFVXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 347
            IKEY+KDPSKF                             ESD D+G  LFD
Sbjct: 267 KIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319


>11_01_0210 -
           1647922-1648065,1648459-1648851,1648930-1649028,
           1649706-1649774,1649877-1650134
          Length = 320

 Score =  102 bits (245), Expect = 1e-22
 Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
 Frame = +3

Query: 9   LDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFNEAT 188
           LD+  EDL EKF +GV+ VA++SL+I YPT+A+APH   NG+KN+LA+A  TE  +  A 
Sbjct: 207 LDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHAD 266

Query: 189 TIKEYIKDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 347
            IKEY+KDPSKF V                            ESD D+G  LFD
Sbjct: 267 KIKEYLKDPSKFAVAAAVAAADSGAAAPAASKEEEKKEEPEEESDGDLGMSLFD 320


>12_01_0211 -
           1601129-1601272,1601670-1602062,1602142-1602240,
           1602920-1602988,1603071-1603328
          Length = 320

 Score =  102 bits (244), Expect = 2e-22
 Identities = 51/114 (44%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
 Frame = +3

Query: 9   LDIKPEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFNEAT 188
           LD+  EDL EKF +GV+ VA++SL+I YPT+A+APH   NG+KN+LA+A  TE  +  A 
Sbjct: 207 LDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHAD 266

Query: 189 TIKEYIKDPSKF-VXXXXXXXXXXXXXXXXXXXXXXXXXXXSESDDDMGFGLFD 347
            IKEY+KDPSKF V                            ESD D+G  LFD
Sbjct: 267 KIKEYLKDPSKFAVAAPVAAADSGAAAVASSKEEEKKEEPEEESDGDLGMSLFD 320


>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 21  PEDLREKFLAGVANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFNEATTIKE 200
           PE  R  F AG A V A      +P  A+A +S   GF+  +A  +V    F+E T  + 
Sbjct: 35  PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFRGGVATRSVA---FDEMTPRRA 91

Query: 201 YIKDPS 218
            +  P+
Sbjct: 92  SVDVPN 97


>03_02_0966 + 12783515-12783901
          Length = 128

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +3

Query: 48  AGVANVAALSLSIGYPTVASAPHSIANGFKN-LLAIAA 158
           AG+A VAA++ ++  P VA A  +++   KN LL+IA+
Sbjct: 67  AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFLLSIAS 104


>03_05_0947 -
           29081007-29081047,29081670-29081958,29083044-29083424,
           29083935-29084129
          Length = 301

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 354 RVHRNRHVVASTPPGRTNPYGGRCDL 431
           R  R+  VV   PP RT P GG C L
Sbjct: 18  RPRRSAAVVCERPPHRTGPAGGSCFL 43


>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESDDDMGF LFD
Sbjct: 99  ESDDDMGFSLFD 110


>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESDDDMGF LFD
Sbjct: 102 ESDDDMGFSLFD 113


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESDDDMGF LFD
Sbjct: 295 ESDDDMGFSLFD 306


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESDDDMGF LFD
Sbjct: 103 ESDDDMGFSLFD 114


>04_01_0142 +
           1640472-1640611,1641618-1641744,1642233-1642425,
           1642793-1643349
          Length = 338

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 14  HQAGGPSREVPCWSGQRGRALVVHRVPDGR 103
           H AG P      W G+R RA   H +P GR
Sbjct: 13  HLAGQPPLLTAGWGGRRERARRSHAMPTGR 42


>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
          Length = 274

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 58  PTWPRSRCPSGTRRSRL 108
           PT PRSR PS +RR R+
Sbjct: 149 PTTPRSRAPSSSRRRRM 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,451
Number of Sequences: 37544
Number of extensions: 167058
Number of successful extensions: 504
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)