Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L09
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.67 
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_55751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_53284| Best HMM Match : DUF1279 (HMM E-Value=1.5)                   27   8.2  
SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 27   8.2  
SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)                     27   8.2  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESDDDMGFGLFD
Sbjct: 751 ESDDDMGFGLFD 762


>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = +3

Query: 312 ESDDDMGFGLFD 347
           ESDDDMGFGLFD
Sbjct: 99  ESDDDMGFGLFD 110


>SB_55751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +3

Query: 57  ANVAALSLSIGYPTVASAPHSIANGFKNLLAIAAVTEVDFNEATT 191
           A +AA +++  +PT  + P + AN    LL IAA T  D   ATT
Sbjct: 44  ATIAATTITT-FPTATNPPITAANRMITLLTIAATT-ADIIAATT 86


>SB_53284| Best HMM Match : DUF1279 (HMM E-Value=1.5)
          Length = 427

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 8   ARHQAGGPSREVPCWSGQRGRALVVH 85
           AR       R V  W G RGRAL VH
Sbjct: 307 ARSGGSHARRSVRTWRGGRGRALCVH 332


>SB_29802| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 546

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -2

Query: 453 LHRNVMFVSRIDRHMGLSVPAVLMRPHVYYDAHVLSQRDQSPC 325
           L++ V  +S       L +  V + P  YY A +L Q    PC
Sbjct: 419 LNKGVWIISMTSTSSDLLMDYVALLPEEYYKAPLLHQSPSEPC 461


>SB_14512| Best HMM Match : IncA (HMM E-Value=0.12)
          Length = 642

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 8   ARHQAGGPSREVPCWSGQRGRALVVH 85
           AR       R V  W G RGRAL VH
Sbjct: 307 ARSGGSHARRSVRTWRGGRGRALCVH 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,727,490
Number of Sequences: 59808
Number of extensions: 176757
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)