Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_L08
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 93 3e-20
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 71 1e-13
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 68 9e-13
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 68 9e-13
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 63 4e-11
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 56 5e-09
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 43 4e-05
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 33 0.033
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 1.2
SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S... 28 1.2
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 25 6.5
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 25 8.6
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 8.6
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 93.1 bits (221), Expect = 3e-20
Identities = 43/90 (47%), Positives = 61/90 (67%)
Frame = +3
Query: 132 IKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECE 311
+ D + K+ + + DKLVV+DF ATWCGPCK I PK ++ +N SD+ +KVDVD+
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDA-TFIKVDVDQLS 61
Query: 312 DIAAEYNINAMPTFVFVKATKKLEEFSGAN 401
+IAAE ++AMP+F K +K+EE GAN
Sbjct: 62 EIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 70.9 bits (166), Expect = 1e-13
Identities = 33/91 (36%), Positives = 55/91 (60%)
Frame = +3
Query: 132 IKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECE 311
++ F D TR+S DK+ V+DF A WCGPCK + P L+++ +E + + V+ D+
Sbjct: 22 VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78
Query: 312 DIAAEYNINAMPTFVFVKATKKLEEFSGANV 404
DIA + + A+PT V + ++L+ GA+V
Sbjct: 79 DIAQKNGVYALPTMVLFRKGQELDRIVGADV 109
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 68.1 bits (159), Expect = 9e-13
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +3
Query: 126 IHIKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEM-SDSIVVLKVDVD 302
I I+ + + + ++G + +D A WCGPCK I P ++A++ S V KV+VD
Sbjct: 4 IEIRSYQHWISTIPKSG--YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVD 61
Query: 303 ECEDIAAEYNINAMPTFVFVKATKKLEEFSGAN 401
E IA+ + AMPTFVF + K+++ +GAN
Sbjct: 62 EQRQIASGLGVKAMPTFVFFENGKQIDMLTGAN 94
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 68.1 bits (159), Expect = 9e-13
Identities = 29/94 (30%), Positives = 53/94 (56%)
Frame = +3
Query: 120 MSIHIKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDV 299
MS+ I + + L +++++++F A W PCK + D+ A + ++ V LK++
Sbjct: 1 MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNA-VFLKIEA 59
Query: 300 DECEDIAAEYNINAMPTFVFVKATKKLEEFSGAN 401
++ DIA +++NA+P FV + K L SGAN
Sbjct: 60 EKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 62.9 bits (146), Expect = 4e-11
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 177 DKLVVIDFMATWCGPCKMIGPKLDEMANEM-SDSIVVLKVDVDECEDIAAEYNINAMPTF 353
DK++++ F A WCG CK + P+ + A+E+ D I +++VD E D+ +EY+I PT
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98
Query: 354 VFVKATKKLEEFSG 395
K K++ ++SG
Sbjct: 99 NVFKNGKQISQYSG 112
Score = 56.0 bits (129), Expect = 4e-09
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +3
Query: 138 DFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSD--SIVVLKVDVDECE 311
+FDD+ + E D V+++F A WCG CK + P +++A E SD ++VV K+D E
Sbjct: 364 NFDDIV--MDETKD--VLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATE-N 418
Query: 312 DIAAEYNINAMPTFVFVKATKKL 380
DI+ +I+ PT +F KA K+
Sbjct: 419 DISV--SISGFPTIMFFKANDKV 439
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 55.6 bits (128), Expect = 5e-09
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 126 IHIKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSD--SIVVLKVDV 299
+ ++ ++L+ + A K +I+F ATWCG CK + P +E+ D +++ K+D
Sbjct: 23 VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81
Query: 300 DECEDIAAEYNINAMPTFVF 359
D D+A +Y+I PT ++
Sbjct: 82 DTHSDVADKYHITGFPTLIW 101
Score = 41.5 bits (93), Expect = 9e-05
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +3
Query: 180 KLVVIDFMATWCGPCKMIGPKLDEMANEMSD--SIVVLKVDVDECEDIAAEYNINAMPTF 353
K V+++F A WCG CK + P + + + ++ ++K++ D DI + + + PT
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTI 218
Query: 354 VF 359
F
Sbjct: 219 KF 220
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 174 GDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECED--IAAEYNINAMP 347
G LVV F A WCG CK + P ++A+ + + V VD D ++ + ++Y + P
Sbjct: 49 GPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFP 106
Query: 348 TFVFVKATKKLEEFSGAN 401
T V + K S +
Sbjct: 107 TIKLVYPSSKGSSLSSTD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 33.1 bits (72), Expect = 0.033
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 165 SEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKV---DVDECEDIAAEYNI 335
SE I + CG CK +GP D M + + + +VD +++++ NI
Sbjct: 38 SEVSKGTWFIKYYLPSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANI 97
Query: 336 NAMPTFVFVKATKKLEE 386
A+PT + + +EE
Sbjct: 98 RAVPTLYLYQNGEIVEE 114
Score = 32.3 bits (70), Expect = 0.057
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 192 IDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECEDIAAEYNINAMPTFVFVK 365
I F ++ C C + MAN M + V ++ + +Y+I PTF+F K
Sbjct: 303 IQFYSSECDDCDDVSTAWYAMANRMRGKLNVAHINCAVSKRACKQYSIQYFPTFLFFK 360
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 436 FNFKMVFLSLSTFAPENSSSFLVALTNTK 350
F +K ++ SLS F ENS ++ L TK
Sbjct: 1157 FPYKPIYFSLSDFLKENSDEIILVLILTK 1185
>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
Dim1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 27.9 bits (59), Expect = 1.2
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +3
Query: 162 LSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECEDIAAEYNINA 341
LSE ++LVVI F C L +A ++ + V+ VD+DE D Y +
Sbjct: 19 LSEQ-ERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYD 77
Query: 342 MPTFVFVKATKKL 380
T +F K +
Sbjct: 78 RTTIMFFYRNKHM 90
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 419 VLEFVDVRAGELFEFLGRLNKHESRHRVDVIF 324
VLEF++ +L + G+LN++ + V IF
Sbjct: 77 VLEFLESLIQDLTHYFGKLNENTVKDNVSFIF 108
>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -2
Query: 266 HFVSHLVEFGPDHLAGSAPSRHEVNHDELVARLRQPGL 153
HF SHL + P G S +NH Q GL
Sbjct: 207 HFDSHLDSWKPKVFGGGKSSVGSINHGTYFYHASQEGL 244
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 153 KTRLSEAGDKLVVI---DFMATWCGPCKMIGPKLDEMANEMSDSIVVL 287
K +EAG I D ++ W G + + +L EMA E SI+ +
Sbjct: 180 KAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFI 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,262,759
Number of Sequences: 5004
Number of extensions: 43491
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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