Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L07
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   3.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   8.7  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   8.7  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    25   8.7  

>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -1

Query: 223  FRHPSLSASLMVR--GILKKWSTPTLSSDQPYFTLSP 119
            FR P   + L+     +L KWSTPT   +   F  SP
Sbjct: 2123 FREPIRISKLLQNFPALLSKWSTPTKLVEPSQFRASP 2159


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 305 LVKQRTHQPARRTVHD*LRK-RAWRSTYLPPSFTLCLANGT 186
           +V  +T +P R  V D LRK +  R+   PP+    LA  T
Sbjct: 21  IVAHKTGEPVRYEVEDDLRKLKPSRTAPKPPAINTNLAEDT 61


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 120 RCVVIHKRPWQERRI*RSSYYMITYKFGRYRPL 22
           +C++I   PW  + + RSS Y +    G  + L
Sbjct: 229 KCIIIDP-PWPNKSVARSSVYKVNRNLGYLKAL 260


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 447 QYYATEESLKKGPIPKIENGATLQHGGVWVTGPDGHLMKISADEAG 584
           QY   E+S   G +  +  G T   GG+ +  P  ++ ++ AD  G
Sbjct: 262 QYIGKEKSKDDGWLGLVGKGVTFDSGGISIK-PSQNMKEMRADMGG 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,428
Number of Sequences: 5004
Number of extensions: 66107
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)