Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L07
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0194 + 2130274-2131725                                           29   2.2  
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510...    29   2.2  
10_01_0181 - 2041502-2043013                                           28   6.8  
07_03_1763 - 29316969-29318120                                         27   8.9  
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717...    27   8.9  

>10_01_0194 + 2130274-2131725
          Length = 483

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 542 SSNPHTAVLQRSSIFYFGNRSFLQRLFGGIILCGSPIIPGRFPVVGG 402
           S  P+ A L   + F FG  +  QRL   ++    P +P   P+VGG
Sbjct: 154 SRRPYDAYLYIDN-FMFGRHTEKQRLLNFLLEYNPPSLPAVLPIVGG 199


>01_02_0050 +
           10649275-10649655,10649807-10649921,10651003-10651009,
           10651035-10651216,10651318-10651530,10651621-10651688,
           10651772-10651846,10651961-10652068,10652413-10652530,
           10652652-10652793,10653084-10653140,10653281-10653701,
           10654064-10654528
          Length = 783

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 398 CSRRRQGTGQGLLDYHTILCHRRVSEERTDSQ 493
           CSRR  G  +G +D+  +   RRVS E  D +
Sbjct: 36  CSRRELGRAEGEIDFGVVDKRRRVSPEDDDGE 67


>10_01_0181 - 2041502-2043013
          Length = 503

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 536 NPHTAVLQRSSIFYFGNRSFLQRLFGGIILCGSPIIPGRFPVVGG 402
           NP++  L   + F FG +   Q++   ++L   P IP   P++GG
Sbjct: 178 NPYSTYLYIDN-FMFGRQVERQQIMSILMLDDHPKIPAVLPIIGG 221


>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 118 LCCNPQTAVARAKNITIFILYDY 50
           LC  P   +A A N T++ LYDY
Sbjct: 119 LCGGPNITMAMADNKTMYALYDY 141


>01_01_0911 -
           7176355-7176372,7176502-7176756,7177352-7177615,
           7177691-7177810,7177910-7178041,7178136-7178252,
           7178335-7178459,7178611-7178920,7179368-7179550,
           7179643-7179787,7180126-7181355,7181454-7181563,
           7181768-7182037,7182130-7182963
          Length = 1370

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 117 NGLRVKYGWSDDNVGVDHFFKIPRTISEAESEGWRKISRPPGPLPELI 260
           N +R    W+D +   D +   PR   +   +GWR++ RPP   P+ +
Sbjct: 273 NDVRYNPIWADADEAADLY---PR---QGSGKGWRELMRPPSLYPQRV 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,452,218
Number of Sequences: 37544
Number of extensions: 459193
Number of successful extensions: 1225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)