Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L07
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   0.49 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   0.49 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   0.49 
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    31   0.86 
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    31   0.86 
U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    29   3.5  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      29   3.5  
U53141-4|AAA96106.1|  528|Caenorhabditis elegans Mutator protein...    28   4.6  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z81044-1|CAB02810.1|  223|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +3

Query: 327 QIALPVDNYESPVTDLGKKFVKWHAPA-DDREPARDYWTTTQYYATEESLKKGPIPKIEN 503
           ++A   D+ ++P T +     KW  P  DD  PA D    T    T    KK P P  E+
Sbjct: 500 KVAAKPDSAQAPATPVKNPVKKWRPPWEDDETPADDVSKPTDAKKTPSLAKKDPAPAKES 559



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
 Frame = +3

Query: 330  IALPVDNYESPVTDLGKKFVKWHAP-ADDREPARDYWTTTQYYATEESLKKGP 485
            I +P +  E+P T +     KW  P  DD EPA           T    KK P
Sbjct: 965  IPIPANTQEAPPTPVKNPVKKWKPPWEDDDEPAEPVSAPEPEKKTPVLAKKAP 1017


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 57   YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAESEGWRKI 227
            ++ K V  F+  +++CG   N     VKY  ++D    ++ FF   RT SE  S  W+++
Sbjct: 1130 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 1189


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 57   YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAESEGWRKI 227
            ++ K V  F+  +++CG   N     VKY  ++D    ++ FF   RT SE  S  W+++
Sbjct: 1130 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 1189


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +3

Query: 57  YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAESEGWRKI 227
           ++ K V  F+  +++CG   N     VKY  ++D    ++ FF   RT SE  S  W+++
Sbjct: 713 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 772


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +3

Query: 189 TISEAESEGWRKISRPPGPLPELIMYCTSGRLVCPLFHKTGFVLGLQIALPVDNYESPVT 368
           TI + E E +RK + PP P   L +  T+ R++   F + G + G++    V    SP++
Sbjct: 70  TIDDEEEEEYRKPA-PPEPTKFLQVSRTTVRMLAGGFSRAGSLEGVETGGIVGPPMSPIS 128

Query: 369 DLGK 380
            LGK
Sbjct: 129 FLGK 132


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = +3

Query: 189 TISEAESEGWRKISRPPGPLPELIMYCTSGRLVCPLFHKTGFVLGLQIALPVDNYESPVT 368
           TI + E E +RK + PP P   L +  T+ R++   F + G + G++    V    SP++
Sbjct: 70  TIDDEEEEEYRKPA-PPEPTKFLQVSRTTVRMLAGGFSRAGSLEGVETGGIVGPPMSPIS 128

Query: 369 DLGK 380
            LGK
Sbjct: 129 FLGK 132


>U64840-7|AAB04965.1|  340|Caenorhabditis elegans Hypothetical
           protein ZC317.1 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +3

Query: 156 VGVDHFFKIPRTISEAESEGWRKISRPPGPLPELIMYCTSGRLVCPLFHKTGFVLGLQIA 335
           +G  + F IP  I  A             P P +++  ++  LV  LF++   +LGLQ  
Sbjct: 41  IGKTYAFLIP-AIEAALENRQSNCFESTKPSPSILIMASTSALVDQLFNRCELILGLQC- 98

Query: 336 LPVDNYESPVTDL 374
             +DN E P+ D+
Sbjct: 99  --MDNVE-PIRDI 108


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 394 GMLPPTTGNRPGIIGLPHNIMPPK 465
           GM PP    RPG  G P N+ PP+
Sbjct: 807 GMYPPLIPTRPGPGGPPPNMAPPR 830


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 394 GMLPPTTGNRPGIIGLPHNIMPPK 465
           GM PP    RPG  G P N+ PP+
Sbjct: 807 GMYPPLIPTRPGPGGPPPNMAPPR 830


>U53141-4|AAA96106.1|  528|Caenorhabditis elegans Mutator protein 14
           protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 243 PLPELIMYCTSGRLVCPLFHKTGFVLGLQIALPVDNYESPVTDL 374
           P P +++  ++  LV  LF++   +LGLQ    +DN E P+ D+
Sbjct: 169 PSPSILIMASTSALVDQLFNRCELILGLQC---MDNVE-PIRDI 208


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 292 GHTSLPDVQYMINSGSGPGGRLIFRHPSLSASL 194
           G +S+P +   +NSGS   G  + + PS S S+
Sbjct: 606 GTSSIPSISTSVNSGSSTIGSTVTQAPSSSTSM 638


>Z81044-1|CAB02810.1|  223|Caenorhabditis elegans Hypothetical
           protein C30H6.1 protein.
          Length = 223

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 512 VATRRCVGYWTRWTSN 559
           + T +C   WTRWT N
Sbjct: 94  IGTAKCASGWTRWTGN 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159,805
Number of Sequences: 27780
Number of extensions: 378832
Number of successful extensions: 969
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)