Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L04
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0208 + 1532691-1533209                                           30   0.93 
07_01_0209 + 1544347-1544796                                           28   3.8  
11_01_0681 - 5568312-5568328,5569057-5569213,5569321-5569482,556...    27   6.6  
03_05_0411 - 23972738-23973606,23977701-23977794,23978487-239785...    27   6.6  
06_01_1138 - 9429447-9433868                                           27   8.7  

>07_01_0208 + 1532691-1533209
          Length = 172

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 10  NYGPAGNYIDQSPY 51
           NY P GNYI QSPY
Sbjct: 159 NYSPPGNYIGQSPY 172


>07_01_0209 + 1544347-1544796
          Length = 149

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 10  NYGPAGNYIDQSPY 51
           NY P GN++ QSPY
Sbjct: 136 NYSPPGNFVGQSPY 149


>11_01_0681 -
           5568312-5568328,5569057-5569213,5569321-5569482,
           5569524-5570546
          Length = 452

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 28  NYIDQSPYKAGKPSGQLVCGNYDCKRPYGERC 123
           NY++QSP   G PSG  + G        G RC
Sbjct: 288 NYMNQSPVFEGIPSGSFITGQEVGVVSSGTRC 319


>03_05_0411 -
           23972738-23973606,23977701-23977794,23978487-23978549,
           23979558-23979630,23980325-23980375,23980491-23980906,
           23981066-23981396,23983165-23983223,23983799-23983975
          Length = 710

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 36  RSVSLQSRQTQRTISMRQLRLQTSLRREVLIFDEKKKFFSNDQLLIITF 182
           + V L  R+ QRT   R+L  Q+  + E      +KKF S    L+ +F
Sbjct: 278 KDVPLLKRKNQRTGRRRELHAQSDSKPEAAATQNEKKFSSIWFSLVASF 326


>06_01_1138 - 9429447-9433868
          Length = 1473

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 260 NKNNVLRNICKKIFLLSH 313
           NKN+ L++IC KI LL +
Sbjct: 898 NKNHYLKDICNKILLLKY 915


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,220,398
Number of Sequences: 37544
Number of extensions: 123838
Number of successful extensions: 272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)