Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L04
         (438 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      27   8.9  

>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 67  WVCLLCRETDRCNYQPARSC 8
           WVC +CR+T R N + +  C
Sbjct: 157 WVCDVCRQTSRINERFSHHC 176


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 126  STPLAVGTFAVVVAAY*LSAGFACFVGRLIDVITSRPVVAS 4
            STP A G  A   A    S+  + FV     V+TS P  AS
Sbjct: 2287 STPFAFGAPATAAAVSTASSAPSAFVFGATPVVTSTPAAAS 2327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,105,909
Number of Sequences: 59808
Number of extensions: 161733
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)