Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_L03
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 89 2e-18
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 52 2e-07
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 49 2e-06
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 46 1e-05
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 46 1e-05
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 2e-04
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 42 2e-04
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 5e-04
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 41 7e-04
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 40 9e-04
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 40 9e-04
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 40 0.001
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 40 0.001
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 40 0.001
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 39 0.003
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 38 0.006
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 37 0.008
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 33 0.13
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 32 0.23
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.94
SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041) 29 1.6
SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_29270| Best HMM Match : FMN_dh (HMM E-Value=1.4e-08) 27 8.8
SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 89.0 bits (211), Expect = 2e-18
Identities = 37/77 (48%), Positives = 51/77 (66%)
Frame = +2
Query: 62 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXX 241
KK K + PKR MSAYMLWLN R++IK ++PG+ VTE++K GEMWK++ DKS W
Sbjct: 534 KKKKDPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKA 593
Query: 242 XXXXXQYAKDLESYNAN 292
+Y + ++ YN N
Sbjct: 594 AIEKQKYVQRMKEYNEN 610
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 52.4 bits (120), Expect = 2e-07
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +2
Query: 59 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 232
+K +K + PK P++ Y+ +LN RE+++SE+P L E+ + G MW + K ++
Sbjct: 168 KKAHKDVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFL 227
Query: 233 XXXXXXXXQYAKDLESY 283
+Y K+LE Y
Sbjct: 228 EEAEKDKERYMKELEEY 244
>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Frame = +2
Query: 59 RKKNKMTDKPKRPMSAYMLW---LNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKS 223
RKK +KPK P++ Y+ + LNS RE +K +HP L EI K G+ W S+ ++K
Sbjct: 185 RKKEYDLNKPKAPVTGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEKQ 244
Query: 224 IWXXXXXXXXXQYAKDLESY 283
+ +Y ++L +Y
Sbjct: 245 KFLDEAEEDKKRYVEELRAY 264
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +2
Query: 56 IRKKNKMTDKP--KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 217
+R T KP KRPM+A+M+W +AR ++ ++P L E++K G++WK + D
Sbjct: 52 VRVNGIKTQKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLND 107
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 59 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 217
+K+ K +KPKR +SAY ++N R+ +K ++P ++K GEMW M D
Sbjct: 93 KKQTKDPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTD 145
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 71 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXX 244
K +KPK SAY +L RE+++ E + + +K E WK+M ++K +
Sbjct: 7 KDPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAG 66
Query: 245 XXXXQYAKDLESY 283
++ ++++SY
Sbjct: 67 KDKERFKEEMQSY 79
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +2
Query: 62 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 217
KK KRPM+A+M+W R ++ EHP + EI+K+ G+ WK + +
Sbjct: 37 KKKSDMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLLSE 88
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +2
Query: 59 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 232
++K K+ +P +P+SAY ++ + I+ ++P + EIAK G+MW+++ + K ++
Sbjct: 916 KRKTKIEGEPPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQKKVYH 975
Query: 233 XXXXXXXXQYAKDLE 277
+Y K ++
Sbjct: 976 CKHETAKAEYQKAMD 990
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 71 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 217
K + KRPM+A+M+W R +I E+P + +EI+K+ G WK + D
Sbjct: 322 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 370
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 71 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 217
K + KRPM+A+M+W R +I E+P + +EI+K+ G WK + D
Sbjct: 5 KPVEHVKRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLAD 53
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 44.8 bits (101), Expect = 4e-05
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +2
Query: 65 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 220
K D+ KRPM+A+M+W R ++ ++P + +EI+K+ G WK + ++
Sbjct: 782 KANSADRVKRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQ 833
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 44.4 bits (100), Expect = 5e-05
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +2
Query: 71 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 211
K K KRPM+++M+W SAR ++ ++P + E++K G++W+ +
Sbjct: 106 KKDPKVKRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +2
Query: 71 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 211
K D KRPM+AYM+W R +I E P + +EI+K+ G W S+
Sbjct: 3 KPGDHIKRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 211
KRPM+A+M+W + R Q+ +E+P L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 211
KRPM+A+M+W + R Q+ +E+P L ++I+K G W+ +
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKS-EHPGLKVTEIAKKGGEMWKSMKDK 220
KRPM+A+M+W + R +IKS E P + +EI+K G WK+MKD+
Sbjct: 10 KRPMNAFMVW-SKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 40.7 bits (91), Expect = 7e-04
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 80 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 217
D KRP++++M+W R + E+P ++ EI+K G+ W+ M +
Sbjct: 8 DHVKRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPE 53
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/50 (32%), Positives = 31/50 (62%)
Frame = +2
Query: 62 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 211
+K+ T++ KRPM+A+M+W R ++ +P L E++K G W+++
Sbjct: 358 EKDDETERIKRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 40.3 bits (90), Expect = 9e-04
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXXXXXXXXQY 262
KRPM+++M+W R + E+P L EI+K G+ W + KDK + ++
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAERLRIRH 154
Query: 263 AKDLESY 283
K+ +Y
Sbjct: 155 MKEHPNY 161
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 40.3 bits (90), Expect = 9e-04
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +2
Query: 86 PKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKD 217
P++P+ YM + +Q+K+++P K+ +I K G+MW+ + D
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDD 71
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 26 QFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 205
Q K N +I A R K D+ + + + LWL R+QI+ E+P + ++ K + WK
Sbjct: 310 QSKVNNQIKADRPDEK-ADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWK 368
Query: 206 SMK--DKSIW 229
+ +K +W
Sbjct: 369 GLDSVEKKVW 378
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 65 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXX 238
KNK + + P+SA+ LW N AR+ + +P + ++ KK WK + K K W
Sbjct: 221 KNKYPNV-EPPLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKK 279
Query: 239 XXXXXXQYAKDLE 277
+Y K ++
Sbjct: 280 EKTEMRKYQKKIK 292
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +2
Query: 80 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 220
++PK P+++Y + R ++ ++P LK TE+A K + W+ M ++
Sbjct: 150 NQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEE 196
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 211
KRPM+ +M+W R QI E+PG+ ++K G WK +
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKL 49
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +2
Query: 71 KMTDKPKRPMSAYMLWLNSAREQI--KSEHPGLKVTEIAKKGGEMWKSM--KDKSIWXXX 238
K DKPKRP +AY L+L + R+++ K+ G K+ +A GE W+ M +DK +
Sbjct: 572 KDPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSLA---GERWREMSDEDKKPYTIQ 628
Query: 239 XXXXXXQYAKDLESY 283
+Y K +E +
Sbjct: 629 EAEERNKYEKVMEEW 643
Score = 35.1 bits (77), Expect = 0.033
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +2
Query: 59 RKKNKMTDKP--KRPMSAYMLWLNSAREQIKSEH-----PGLKVTEIAKKGGEMWKSMKD 217
RKK D P KR SAY+ + + R ++K++ P K E+AK GE WK + D
Sbjct: 485 RKKKAKGDGPVVKRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLND 544
Query: 218 K 220
+
Sbjct: 545 E 545
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 83 KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 220
K KRPM+A+M+W R I +P EI+ + GE+W + +
Sbjct: 100 KVKRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSE 145
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = +2
Query: 77 TDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 220
++K KRP++A++LW R I +E+P + +I++K G W+ + ++
Sbjct: 16 SEKIKRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEE 63
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 37.5 bits (83), Expect = 0.006
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDK 220
KRPM+A+M+W + R ++ ++P + EI+K G W + ++
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRLSEE 53
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 26 QFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWK 205
Q K N +I A R K D+ + + + LWL R+QI+ E+P + ++ K + WK
Sbjct: 17 QSKVNNQIKADRPDEK-ADRQTKKKNGFSLWLEENRDQIEEENPDIPDEDVVKIAMKTWK 75
Query: 206 SM 211
+
Sbjct: 76 GL 77
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 208
KR S Y+L+ + R I+ EHP EI++ GE W++
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 75
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 83 KPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSMKDKSIWXXXXXXXXXQY 262
K KRP A+ + +++K E+P LK EI K + W +++ +Y
Sbjct: 305 KHKRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLEP-----SVKECYRKEY 359
Query: 263 AKDLESYNA 289
+D+E + A
Sbjct: 360 QQDMEEFRA 368
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 33.1 bits (72), Expect = 0.13
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 208
KR S Y+L+ + R I+ EHP EI++ GE W++
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRN 1308
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 32.3 bits (70), Expect = 0.23
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 211
K PM+A+M+ R+ S +PG+ +E +K G WK +
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKML 50
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 30.7 bits (66), Expect = 0.71
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 80 DKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM 211
D +RPM+A+M++ R + +HP ++K GE W ++
Sbjct: 514 DHIRRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWWYAL 557
>SB_40834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1299
Score = 30.3 bits (65), Expect = 0.94
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRKANDL 437
KR RK+ RKRR+ K R+ K RRK L
Sbjct: 1197 KRRRKRKRRRKRKRRRKRKRRRKRKRRRKRKSL 1229
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1035 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1063
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1041 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1069
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1047 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1075
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1071 KRRRKRQRRRKRKRRRKRKRRRKRKRRRK 1099
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1083 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1111
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1089 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1117
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1161 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1189
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1167 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1195
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1173 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1201
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1179 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1207
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1185 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1213
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ K RRK
Sbjct: 1191 KRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1219
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ + RRK
Sbjct: 1053 KRRRKRKRRRKRKRRRKRKRRRKRQRRRK 1081
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ + R+ K RRK
Sbjct: 1059 KRRRKRKRRRKRKRRRKRQRRRKRKRRRK 1087
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ R+RR+ K R+ K RRK
Sbjct: 1065 KRRRKRKRRRKRQRRRKRKRRRKRKRRRK 1093
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
+R RK+ RKRR+ K R+ K RRK
Sbjct: 1077 QRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1105
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ + RRK
Sbjct: 1095 KRRRKRKRRRKRKRRRKRKRRRKRQRRRK 1123
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ + R+ K RRK
Sbjct: 1101 KRRRKRKRRRKRKRRRKRQRRRKRKRRRK 1129
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ R+RR+ K R+ K RRK
Sbjct: 1107 KRRRKRKRRRKRQRRRKRKRRRKRKRRRK 1135
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ RKRR+ K R+ + RRK
Sbjct: 1113 KRRRKRQRRRKRKRRRKRKRRRKRQRRRK 1141
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
KR RK+ R+RR+ K R+ K RRK
Sbjct: 1143 KRRRKRQRRRKRQRRRKRKRRRKRKRRRK 1171
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
+R RK+ RKRR+ K R+ K RRK
Sbjct: 1149 QRRRKRQRRRKRKRRRKRKRRRKRKRRRK 1177
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 339 KRARKQPPLNPRKRRKSLKMRKVNKTRRK 425
+R RK+ RKRR+ K R+ K RRK
Sbjct: 1155 QRRRKRKRRRKRKRRRKRKRRRKRKRRRK 1183
>SB_9716| Best HMM Match : HMG_box (HMM E-Value=0.0041)
Length = 169
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 89 KRPMSAYMLWLNSAREQIKSEHPG 160
KRPM+A+ML+ R +I HPG
Sbjct: 32 KRPMNAFMLFAKRYRLEITQAHPG 55
>SB_52012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 27.5 bits (58), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 354 QPPLNPRKRRKSLKMRKVNKTRRKANDLPIFKT 452
Q P +PR+ LK R + RR+ +D+P ++
Sbjct: 247 QSPSSPRREISDLKSRSPSGVRREKSDIPFTRS 279
>SB_29270| Best HMM Match : FMN_dh (HMM E-Value=1.4e-08)
Length = 157
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 419 PRLVHLPHLQTLPSFSW 369
P+LVH+ H Q PS SW
Sbjct: 89 PQLVHMEHCQIDPSVSW 105
>SB_13497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 17 VVHQFKN-NFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKV 169
V+H F N K +R K K AY+ + +A E+ K + PG+ V
Sbjct: 61 VIHDFAGENVKYLELRSTPKSNPKTGMTKQAYVDAILTAIEEAKQKSPGIVV 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,731,564
Number of Sequences: 59808
Number of extensions: 213350
Number of successful extensions: 777
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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