Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L01
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    21   5.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.8  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 373 LNSGYHLTTVKTY 335
           LNSGY+LTT  ++
Sbjct: 253 LNSGYNLTTFGSF 265



 Score = 21.0 bits (42), Expect = 6.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 312 KCKHTDAWYVLTVVKW*PLLSG*RFLPQ*KIYCKSYTRYNINGF 443
           KC  T +WY   V     ++SG  F+     Y    + YN+  F
Sbjct: 219 KCNLTFSWYSKKVFYSKIIISGSIFMTTTSFYRILNSGYNLTTF 262


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 456 IFFLQIHLYYNEYNFC 409
           ++ L+I  YYN   FC
Sbjct: 321 VYHLEIEKYYNILYFC 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,692
Number of Sequences: 336
Number of extensions: 2379
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)