Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L01
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    30   0.19 
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    27   1.8  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   2.3  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   7.1  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   7.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   9.4  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 6    RKKIEEVKENVRATPTRSSSRLANLPVSTIKTRRASKLVTNNE 134
            R+K+ E   N+R  P RSSSR   + ++  +   +S+ ++  E
Sbjct: 1149 RRKLNEQNPNIRNVPERSSSRFQGIRINYSEAPSSSEEISEEE 1191


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   RKKIEEVKENVRATPTRSSSRLANLPVSTIKTRRASK 116
           RK+I  VKE +R    R  SRL  + V     ++ SK
Sbjct: 48  RKEISSVKEKIRRLDERIDSRLTKISVKENFRKQLSK 84


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 474 KFKYLNIFFLQIHLYYNEY 418
           +F  L++ FLQIHLY + Y
Sbjct: 496 QFACLHLIFLQIHLYVHRY 514


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 33  NVRATPTRSSSRLANLPVSTIK-TRRASKLVTNNE 134
           +V ++ +RSS  ++N P +TIK T R  K +T+ +
Sbjct: 835 DVTSSASRSSDTVSNYPKATIKGTGRIRKRLTDED 869


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 36  VRATPTRSSSRLANLPVSTIKTRRASK 116
           V+ATP +SSS +  LP + IK     K
Sbjct: 602 VQATPRKSSSVITELPDTPIKMNSLDK 628


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 529  EWRDKDTPDIDMFNVMLDKIQISKHFFFTNPFIL*RV 419
            EW  KD       N  L++ Q+ +      PF+L RV
Sbjct: 1036 EWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRV 1072


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,065,918
Number of Sequences: 5004
Number of extensions: 38462
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)