Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L01
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1177 - 26708215-26708309,26708355-26708392,26708476-267095...    29   3.1  
03_05_1162 - 30838687-30838740,30838864-30838949,30840029-30840221     28   5.4  

>12_02_1177 -
           26708215-26708309,26708355-26708392,26708476-26709563,
           26709826-26709945,26710018-26710098,26710696-26710812,
           26711122-26711904
          Length = 773

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 285 LNFSTSNKVKCKHTDAWYVLTVVKW*PLLSG*RF 386
           ++++TSN+VKCK  +A+ +L    W  L  G  F
Sbjct: 492 ISYTTSNEVKCKIRNAYVLLKNFHWAGLTFGGHF 525


>03_05_1162 - 30838687-30838740,30838864-30838949,30840029-30840221
          Length = 110

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 276 ICCLNFSTSNKVKCKHTDAWYVLTVVKW*PLLS 374
           +  + FST  K+    TD+WYVLT+ +  PL S
Sbjct: 43  VALIIFSTKGKLYEYATDSWYVLTLGESFPLNS 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,657,126
Number of Sequences: 37544
Number of extensions: 193508
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)