Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L01
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56933| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_12620| Best HMM Match : SecG (HMM E-Value=2.3)                      28   5.5  
SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_56933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 331

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 511 TPDIDMFNVMLDKIQISKHFFF 446
           TPD++ FN  +  + +S+HF F
Sbjct: 163 TPDMEAFNESISAVDLSRHFTF 184


>SB_12620| Best HMM Match : SecG (HMM E-Value=2.3)
          Length = 172

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 483 CWIKFKYLNIFFLQIHLYYNEYNFCNKSSTEEGIVNH 373
           CW+K  + NIF LQ++L+ +  N  N +   +    H
Sbjct: 135 CWVKL-FTNIFCLQVNLWNSVLNEANITELAQACRKH 170


>SB_33874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 355 LTTVKTYHASVCLHLTLLDVEKFKQHIKLPIVYHF 251
           +T VK YH S     T   ++   +H  +PI +HF
Sbjct: 165 MTLVKAYHGSPLAVSTEKCIKSICKHSIIPITFHF 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,682
Number of Sequences: 59808
Number of extensions: 242436
Number of successful extensions: 400
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)