Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_L01
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.37 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 15   IEEVKENVRA-TPTRSSSRLANLPVSTIKTRRASKLVTNNE*IHF 146
            I +VK  +   TP + ++ +   PV+ +K+   S L +N +  HF
Sbjct: 876  INDVKTQITTNTPAKKATNIGGKPVAVVKSSAQSLLQSNQQ--HF 918


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 498 TCLMLCWIKFKYLNI 454
           TC++ CW    Y+ I
Sbjct: 104 TCVLSCWTNIYYIII 118


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 498 TCLMLCWIKFKYLNI 454
           TC++ CW    Y+ I
Sbjct: 157 TCVLSCWTNIYYIII 171


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 532 IEWRDKDTPDIDMFNVMLDKIQISKH 455
           + WR++   D+    V+ D  Q  KH
Sbjct: 607 LNWRNQKDIDVKTVQVIEDAAQKKKH 632


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 137 DSFLFIFSPFL 169
           DS LF+ SPFL
Sbjct: 387 DSILFVSSPFL 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,811
Number of Sequences: 438
Number of extensions: 2827
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)