Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K24
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    27   1.9  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   3.4  
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi...    26   3.4  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   4.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   5.9  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   7.8  
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    25   7.8  

>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 204 VDCLKSEAERKTNLPSSSLELIHHGKVLKDNVTLQDSGIRNGEM 335
           VDCL ++  R TN  +  +  IH   ++  NV+   SG+  G M
Sbjct: 179 VDCLYTDNPR-TNPDAKPILKIHDTSMVNANVSTPGSGVGTGGM 221


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 211 QSTVLSRPKFSSLHRSIGPGFTFNPKNM 128
           Q +  SRP  SS+H ++ PG    P N+
Sbjct: 274 QPSPYSRPLLSSVHPNLPPGSQSTPANL 301


>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
           Hub1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 73

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +3

Query: 195 DNTVDCLKSEAERKTNLPSSSLELIHHGKVLKDNVTLQDSGIRNG 329
           D+TV   K     +T      + L     V KDN+TL D  I +G
Sbjct: 21  DDTVGDFKKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDG 65


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 383 WDWCSYWLNFLLNNMNHFPIPNAT 312
           ++ C +W NF + N+N F  P  T
Sbjct: 266 YNLCHFWSNFEIANLNFFRSPAYT 289


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 246 PSSSLELIHHGKVLKDNVTLQD 311
           P+  L+LIH G+VL++   L++
Sbjct: 40  PADRLKLIHAGRVLRNETPLEE 61


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 195 DNTVDCLKSEAERKTNLPSSSLELIHHGKVLKDNVTLQDSGIRNG 329
           +++V  LK       ++      LI+ G+VLKD  +L+   I++G
Sbjct: 23  ESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDG 67


>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 114 ENQSCIFLGLKVKPGPIERCKLENFGLDNTVDCLKSEAERKTNLPS 251
           E+ +C +  LKV P P+E   +    +   +  L    + K ++PS
Sbjct: 105 ESAACFYSALKVYPQPVELFAIYERTVPEPIMNLLRAMQAKESIPS 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,580,992
Number of Sequences: 5004
Number of extensions: 25978
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)