Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K24
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0593 + 4408229-4408294,4408764-4409096,4409756-4409794,440...    31   0.49 
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094...    30   1.1  
06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873...    29   2.0  
06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066     29   2.6  
10_08_0361 + 17207657-17207701,17208850-17209773                       28   4.5  
02_02_0240 + 8196140-8198248,8198381-8198650                           27   6.0  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     27   7.9  
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777...    27   7.9  

>02_01_0593 +
           4408229-4408294,4408764-4409096,4409756-4409794,
           4409870-4409937,4410024-4410068,4410478-4410655,
           4410740-4410871,4410941-4411009,4411258-4411305,
           4411498-4411545,4411654-4411763,4412044-4412125,
           4412232-4412345
          Length = 443

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 222 EAERKTNLPSSSLELIHHGKVLKDNVTLQDSGI 320
           E + K + P     LIH+GKVLKD  TL+++ +
Sbjct: 89  EIQGKDSYPWGQQLLIHNGKVLKDESTLEENKV 121


>09_04_0070 +
           14308446-14308511,14308844-14309005,14309420-14309473,
           14310009-14310073,14310391-14310459,14310590-14310767,
           14311085-14311231,14311316-14311432,14311507-14311619,
           14311703-14311781,14311892-14312020
          Length = 392

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 246 PSSSLELIHHGKVLKDNVTLQDSGI 320
           P+    LIH GKVLKD+ TL ++ +
Sbjct: 40  PAEQQMLIHQGKVLKDDTTLDENKV 64


>06_01_1069 +
           8731567-8731632,8732120-8732281,8733028-8733081,
           8733557-8733630,8733706-8733786,8734902-8735079,
           8735336-8735506,8736113-8736202,8736284-8736331,
           8736447-8736562,8736655-8736733,8737101-8737223
          Length = 413

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 246 PSSSLELIHHGKVLKDNVTLQDSGI 320
           P+    LIH GK+LKD+ TL+ + +
Sbjct: 40  PADQQMLIHQGKILKDDTTLEGNKV 64


>06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066
          Length = 489

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 256 DDDGRLVFLSASLLRQSTVLSRPKFSSLHRSIGP 155
           DD  RLV  SA   R   VL+ P F++ HR+  P
Sbjct: 32  DDPTRLVRASAVCKRWRRVLADPSFAARHRAFHP 65


>10_08_0361 + 17207657-17207701,17208850-17209773
          Length = 322

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 183 NFGLDNTVDCLKSEAERKTNLPSSSLELIHHGKVLKDNVTLQDSGIRNGE 332
           N    N++  +K+E E++  +  +   L++ G+ L+DN  L    +RN +
Sbjct: 102 NMRKSNSIADIKAEIEQEEGILMNEQILMYAGQQLEDNQLLSQCDLRNDQ 151


>02_02_0240 + 8196140-8198248,8198381-8198650
          Length = 792

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 192 LDNTVDCLKSEAERKTNLPSSSLELIHHGKVLKDNVTL 305
           L +TV  LK +   +  LP++  +L      LKDN+TL
Sbjct: 732 LSDTVGSLKEQIAGELQLPANKQKLSVRTSFLKDNLTL 769


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +3

Query: 90   KRATIATMENQSCIFLGLKVKPGPIERCKLENFGLDNTVDCLKSEAERKTNLPSSSLELI 269
            +R +  +M + +C    LKVK  P+    L+ F L    DC K E ERK+ L   S   I
Sbjct: 988  ERCSCTSMRDLNCSLRVLKVKKCPV----LKVFPLFE--DCQKFEIERKSWLSHLSKLTI 1041

Query: 270  H 272
            H
Sbjct: 1042 H 1042


>02_02_0206 -
           7771835-7771913,7772083-7772219,7772364-7772422,
           7772535-7772610,7772717-7772873,7773241-7773329,
           7773648-7773750,7773919-7774013,7774301-7774367,
           7774894-7775066
          Length = 344

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 250 DGRLVFLSASLLRQSTVLSRPKFSSL 173
           DG LV+LS   L  ST+L++  + SL
Sbjct: 295 DGELVYLSGESLISSTILNKSVYQSL 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,711,273
Number of Sequences: 37544
Number of extensions: 149475
Number of successful extensions: 430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)