Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K24
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical pr...    32   0.19 
AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical ...    32   0.19 
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    31   0.57 
Z68335-2|CAA92731.1|  390|Caenorhabditis elegans Hypothetical pr...    28   3.1  
L23645-2|AAN63392.1|  246|Caenorhabditis elegans Hypothetical pr...    27   9.3  
L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z83129-7|CAB05644.1|  256|Caenorhabditis elegans Hypothetical
           protein W06G6.12 protein.
          Length = 256

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 383 WDWCSYWLNFLLNNMNHFPIPNATV-LKGYIIFQHFTMMYQF 261
           W+ C+YW++  +++  H   PN    +K ++ F   T  ++F
Sbjct: 120 WECCAYWVSKRMSSQEHHTCPNCNCRVKAHVAFSLVTDAFEF 161


>AL021508-1|CAA16431.1|  170|Caenorhabditis elegans Hypothetical
           protein Y70C5B.1 protein.
          Length = 170

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 383 WDWCSYWLNFLLNNMNHFPIPNATV-LKGYIIFQHFTMMYQF 261
           W+ C+YW++  +++  H   PN    +K ++ F   T  ++F
Sbjct: 34  WECCAYWVSKRMSSQEHHTCPNCNCRVKAHVAFSLVTDAFEF 75


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 207 DCLKSEAERKTNLPSSSLELIHHGKVLKDNVTLQDSGIR 323
           + +K EA  K NLP S    I HG    DN+ ++++ I+
Sbjct: 400 EMIKLEAYLKANLPKSGKSTIVHGDFRVDNLIIEENEIK 438


>Z68335-2|CAA92731.1|  390|Caenorhabditis elegans Hypothetical
           protein C29F4.3 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 294 YLSTLYHDVSILKMMMAD*FFFQLHF*DNQQYCQDQNFQVYIVL 163
           +L T+Y   S+LK++    FFF   + D      +Q F + I+L
Sbjct: 78  FLGTVYFPTSLLKVIYVIDFFFSAQWIDEVSEALNQIFNMTIIL 121


>L23645-2|AAN63392.1|  246|Caenorhabditis elegans Hypothetical
           protein F54F2.5b protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 NFGLDNTVDCLKSEAERKTNLPSSSLE 263
           NFGLDN+ D + +EA   +NL  + +E
Sbjct: 184 NFGLDNSSDLVVNEATIASNLMVNEVE 210


>L23645-1|AAK26138.1|  582|Caenorhabditis elegans Hypothetical
           protein F54F2.5a protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 183 NFGLDNTVDCLKSEAERKTNLPSSSLE 263
           NFGLDN+ D + +EA   +NL  + +E
Sbjct: 520 NFGLDNSSDLVVNEATIASNLMVNEVE 546


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,692,525
Number of Sequences: 27780
Number of extensions: 143126
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)