Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_K23
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 253 1e-68
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 253 1e-68
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 253 1e-68
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 83 2e-17
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 50 1e-07
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 31 0.068
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos... 27 1.1
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 2.6
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch... 26 2.6
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.6
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 25 4.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 5.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 7.8
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 7.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 253 bits (619), Expect = 1e-68
Identities = 114/157 (72%), Positives = 132/157 (84%)
Frame = +1
Query: 10 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIS 189
HHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS
Sbjct: 293 HHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQIS 352
Query: 190 NGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVES 369
GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+
Sbjct: 353 AGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEA 412
Query: 370 FQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKV 480
F ++ PLGRFAVRDMRQTVAVGVIKAV G KV
Sbjct: 413 FTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKV 449
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 253 bits (619), Expect = 1e-68
Identities = 114/157 (72%), Positives = 132/157 (84%)
Frame = +1
Query: 10 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIS 189
HHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS
Sbjct: 293 HHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQIS 352
Query: 190 NGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVES 369
GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+
Sbjct: 353 AGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEA 412
Query: 370 FQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKV 480
F ++ PLGRFAVRDMRQTVAVGVIKAV G KV
Sbjct: 413 FTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKV 449
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 253 bits (619), Expect = 1e-68
Identities = 114/157 (72%), Positives = 132/157 (84%)
Frame = +1
Query: 10 HHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIS 189
HHE+L +PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS
Sbjct: 293 HHESLDAGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQIS 352
Query: 190 NGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVES 369
GY+PVLDCHTAHIACKFAE+ EK+DRR+GK E++PK +KSGDA I +VPSKP+CVE+
Sbjct: 353 AGYSPVLDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEA 412
Query: 370 FQEFPPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKV 480
F ++ PLGRFAVRDMRQTVAVGVIKAV G KV
Sbjct: 413 FTDYAPLGRFAVRDMRQTVAVGVIKAVEKVAPGAAKV 449
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 83.0 bits (196), Expect = 2e-17
Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 1/147 (0%)
Frame = +1
Query: 16 EALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNG 195
E + ++ GD V V+ +++ GYV +KN P F AQ+ +L P ++ G
Sbjct: 519 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTG 576
Query: 196 YTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQ 375
Y+ V+ HTA FA++ K+D+ T + ++ P G I L P+C+E F+
Sbjct: 577 YSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFE 635
Query: 376 EFPPLGRFAVRDMRQTVAVG-VIKAVN 453
++ +GRF +RD TVAVG V+K ++
Sbjct: 636 DYQYMGRFTLRDQGTTVAVGKVVKILD 662
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 50.4 bits (115), Expect = 1e-07
Identities = 42/138 (30%), Positives = 63/138 (45%)
Frame = +1
Query: 31 AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 210
AV GD V + ++ V +LR G + + +N P R F A++ + G I +G T VL
Sbjct: 461 AVAGDTVTLQLADIEVNQLRPGDILSNYEN-PVRRVRSFVAEIQTFDIHGPILSGSTLVL 519
Query: 211 DCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPL 390
H+ + K+ K + + S K I L PLC+ +E P L
Sbjct: 520 -----HLGRTVTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCLA--EECPAL 571
Query: 391 GRFAVRDMRQTVAVGVIK 444
GRF +R TVA G++K
Sbjct: 572 GRFILRRSGDTVAAGIVK 589
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 31.5 bits (68), Expect = 0.068
Identities = 30/140 (21%), Positives = 57/140 (40%)
Frame = +1
Query: 22 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYT 201
L AV GDN G ++++ ++L+RG + P F A +L + T
Sbjct: 308 LDAAVAGDNCGLLLRSIKREQLKRGMIVAQPGTVAPH--QKFKASFYILTK--EEGGRRT 363
Query: 202 PVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEF 381
+D + + + +++ ++ T D+ K + GD + P+ +E Q
Sbjct: 364 GFVDKYRPQLYSRTSDVTVEL---THPDPNDSDKMVMPGDNVEMICTLIHPIVIEKGQ-- 418
Query: 382 PPLGRFAVRDMRQTVAVGVI 441
RF VR+ TV ++
Sbjct: 419 ----RFTVREGGSTVGTALV 434
>SPAC631.01c |acp2||F-actin capping protein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 268
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 329 MAASPDLMDLGLSSVDLPVRRSTFS 255
++ +PDL D+ LSSVD P++ +T S
Sbjct: 27 LSVAPDLADVLLSSVDQPLKVNTCS 51
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 129 QGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPHSLQIC-RNQRESRP 269
+GS ++S + +S + I CIG+ SPH +C R Q +P
Sbjct: 90 KGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQLNGKP 137
>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 350 LEGTRLTMAASPDLMDLGLSSVDLPVRRSTFSLISANLQAMWAVWQSNTGVYPF 189
LE R ++ +L+D LSSV L + + S++S+ + + + G+ PF
Sbjct: 122 LEVKRTEGVSTTELLDRLLSSVPLEIYSTPVSVLSSQIDLLRRFATDSDGLTPF 175
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 314 DLMDLGLSSVDL--PVRRSTFSLISANLQAMWAVWQSNTGVY 195
+L LG++ + P +RST S ++ L W + N GVY
Sbjct: 316 ELSKLGVTIIGSKDPKKRSTHSYVAKILNPEWDAFLKNEGVY 357
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 273 TTVDFLFDFGKFAGYVGCVAIQYRCVSV*YLTWV 172
T +D+LF F+ +G + Y ++V Y+ WV
Sbjct: 73 TLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWV 106
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/68 (22%), Positives = 33/68 (48%)
Frame = +2
Query: 38 PVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTHLYWIA 217
P + +++ S + S + +VT ++ TTH +++T + T + D+H +
Sbjct: 379 PTSSILTNSGSIKSGDHQIVTTSFVQTTTHGSQVETLTYVTTLTETILTTTYDSHTFLTT 438
Query: 218 TQPT*PAN 241
P+ P+N
Sbjct: 439 ITPS-PSN 445
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 7.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 384 WEFLEGLHTQGLGGNQVDNGGITRFNGFRV 295
++FL+ + + LGGN + G+T G+ +
Sbjct: 389 YDFLQFMTSSPLGGNMACSAGLTSLLGYHL 418
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 254 LISANLQAMWAVWQSNTGV 198
L+SA+ W +W +TGV
Sbjct: 280 LVSASFDTTWRLWDVHTGV 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,765
Number of Sequences: 5004
Number of extensions: 49425
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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