Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K22
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   3.4  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   3.4  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.5  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   7.9  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 9   RNVRLVCFKYFEWM*CKFCTLPRC 80
           RN ++ CF   EW  C+ C    C
Sbjct: 147 RNCKVQCFDCHEWYTCRHCHNDAC 170


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 438 EREREKSMRVILNMLSYSVTIGFVHLFKL 352
           E+E+E  + + ++ML+Y     F+H+F+L
Sbjct: 246 EKEQESWLPLFISMLAYPRMPTFLHIFEL 274


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 230 TRGLGVCLIKPTVISFCAYFLYLK*MSHVACAVR*PTL 117
           TRG+ +   +P V +FC Y +++  + ++ C V  P +
Sbjct: 329 TRGVRLLCTEPIVQAFCMYLVFINILLYI-CMVGYPLI 365


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 67  VQNLHHIHSKYLKH 26
           ++ LHHIHS+++ H
Sbjct: 118 LRGLHHIHSRFILH 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,067
Number of Sequences: 5004
Number of extensions: 38886
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)