Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K22
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z70687-1|CAA94616.3|  403|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical ...    27   9.2  
AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z79754-6|CAB02095.1|  368|Caenorhabditis elegans Hypothetical
           protein F25H2.7 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 384 VTIGFVHLFKLGILL*DQINHETIRNDSVFK*EKL 280
           + I  +HL K  I L +Q +HE IRN SV + +K+
Sbjct: 20  ILIEELHLGKGYIYLANQYDHEVIRNISVIRKDKI 54


>Z70687-1|CAA94616.3|  403|Caenorhabditis elegans Hypothetical
           protein T14C1.1 protein.
          Length = 403

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +1

Query: 16  YDSYALNIS--SGCDVNFVHCRVVCSLESRLVYKISRVG*RTAHATCDIHFRYRK 174
           Y+  ALN+S   GCDVN V    +  L S  +   S VG +     C I +   K
Sbjct: 8   YEQAALNMSIPDGCDVNRVVYASIKQLISHDIIDPSSVGFQNCEPLCGICYHGSK 62


>AL033513-2|CAA22079.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 212 CLIKPTVISFCAYFLYLK*MSHVACAVR*PTLEIL*TKRDSSEQTTRQCTK 60
           CLI P + S CA+ +  K ++  A     PT  +    R +   T R   K
Sbjct: 327 CLINPDIRSICAHVITCKKITKPARVKGQPTTPLSKYTRSTKNSTIRDANK 377


>AL021446-4|CAA16267.2|  439|Caenorhabditis elegans Hypothetical
           protein Y70D2A.1 protein.
          Length = 439

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -1

Query: 212 CLIKPTVISFCAYFLYLK*MSHVACAVR*PTLEIL*TKRDSSEQTTRQCTK 60
           CLI P + S CA+ +  K ++  A     PT  +    R +   T R   K
Sbjct: 327 CLINPDIRSICAHVITCKKITKPARVKGQPTTPLSKYTRSTKNSTIRDANK 377


>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 151 DIHFRYRKYAQNEITVGF 204
           D+H RYR  A NEIT  F
Sbjct: 165 DVHNRYRTEAHNEITARF 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,763,135
Number of Sequences: 27780
Number of extensions: 216396
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)