Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K21
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    29   0.35 
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   5.8  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 387 VNYALSKAFLDYLKIHSSLKLRRDCCFKLWLEYPQHNVGKARHCLHLQQSLLTVTIFP 560
           VNY    +  D +    +LK     C    + Y   N+GK +H +HL      + IFP
Sbjct: 690 VNYNHFTSISDAISAMQNLKYLS--CTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFP 745


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 345 SWIIKSCLI*KYCIVNYALSKAFLDYL-KIHSSLKLRRD 458
           +WI +  L+   C V+ A    + DYL  I+ ++K+R D
Sbjct: 432 NWIYQEALLYACCSVDAASDDTYDDYLDPIYEAIKVRID 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,620
Number of Sequences: 5004
Number of extensions: 41541
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)