Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K21
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69787-8|CAA93640.1|  127|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U41558-1|AAK39248.1|  333|Caenorhabditis elegans Hypothetical pr...    29   2.3  

>Z69787-8|CAA93640.1|  127|Caenorhabditis elegans Hypothetical
           protein C44C10.10 protein.
          Length = 127

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 327 CCKCFSQSAQMVHFSFYLFISLLRSSF*GMLFNNLLSVTQ*LLTVYFRSY 178
           CCK    +  + H   YLF+ L  S+  G +   + S+TQ LL++  +++
Sbjct: 11  CCKTTFTALSITHHFIYLFLPLSMSASGGFIIKLIDSMTQ-LLSISVKNF 59


>U41558-1|AAK39248.1|  333|Caenorhabditis elegans Hypothetical
           protein K02B2.3 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +3

Query: 12  VYYKLLYSKVDLVFGYYLQSQ*LMK---CKSLFYIKIFFRKKDKMYVDLFTFQTFI 170
           V Y   YS V   FGYYL +Q   +    +   Y K F+R+  K   D+  +   +
Sbjct: 245 VTYFATYSTVCATFGYYLYTQQSFEYPSARERVYTKQFYRRAQKQNFDIEKYNRLV 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,901,539
Number of Sequences: 27780
Number of extensions: 228980
Number of successful extensions: 415
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)