Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_K20
(495 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 107 9e-25
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 2.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 3.6
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 26 3.6
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 26 3.6
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 3.6
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 25 4.7
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 6.3
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 8.3
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 8.3
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 8.3
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 8.3
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 107 bits (257), Expect = 9e-25
Identities = 54/110 (49%), Positives = 75/110 (68%)
Frame = +2
Query: 83 KSRKRHFSAPSHIRRVLMSAPLSKELRQQFNVKSMPIPAKTTKCRLYEDIIKGQQVGKVL 262
K RK HF APS +RRVLMSAPLSKELR+Q+ ++S+P+ + + + KG++ GK+
Sbjct: 13 KQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPV-RRDDQITVIRGSNKGRE-GKIT 70
Query: 263 HVYRKNFVVYIEWIQRDKANGASVYIGIHPSKCVIVTLKMTNDRKTILDR 412
VYRK F++ IE + R+KANGAS +GI SK VI L + DRK ++ R
Sbjct: 71 SVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVR 120
Score = 31.9 bits (69), Expect = 0.055
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +1
Query: 46 MKYNKLVTSSRHEKQEEAFQCPFSHPTSTYVSTTLQRVKTTVQREIYANSSKDDEVQVVR 225
MK+++ VTSSR ++++ F P S +S L + + +DD++ V+R
Sbjct: 1 MKFSRDVTSSRRKQRKAHFGAP-SSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIR 59
Query: 226 GHYKGPAG 249
G KG G
Sbjct: 60 GSNKGREG 67
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 2.7
Identities = 12/59 (20%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +1
Query: 55 NKLVTSSRHEKQEEAFQCPFSHPTS--TYVSTTLQRVKTTVQREIYANSSKDDEVQVVR 225
+K+ + + ++ C F+ S +++ T+Q K+T++R I ++DE+ ++
Sbjct: 356 SKIPIRKKRKLKDTVSNCEFTEEDSESSFLLETIQPTKSTLRRSISPLKKRNDEINELK 414
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 179 KSMPIPAKTTKCRLYEDIIKGQQVGKVLHVYRKNFVVYIEWIQRDKANGASV 334
K +P+P + RL D++ G + V V+R+ +E ++R++ + SV
Sbjct: 2658 KKLPVP-ECVPFRLTRDVVDGMGITGVEGVFRRCMEFTLETLRREEDSLLSV 2708
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 190 NSSKDDEVQVVRGHYKGPAGGQSITCVP*ELCSLHRMDPA 309
+S K ++ + GH P G +T P EL +H D A
Sbjct: 273 SSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTLVHSADTA 312
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.8 bits (54), Expect = 3.6
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 119 IRRVLMSAPLSKELRQQFNVKSMPIPAKTTKCRLYED 229
I+ +L PL+ +RQQ V+ P+PA + RL ED
Sbjct: 220 IKHLLEHYPLALSVRQQVAVEKGPLPA-GWEMRLSED 255
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 3.6
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 299 WIQRDKANGASVYIGIHPSKCVIVTLKMTNDRKTILDRTASGRLPALGKDNGKYSE 466
WIQ K NGA+ + P+ +V + N+ + + T SG L K G Y++
Sbjct: 190 WIQYLKKNGANFNLIQTPNFQKLVQSGIPNNLRADIWETCSGSLFPRWKSKGFYAK 245
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 4.7
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 206 TKCRLYEDIIKGQQVGKVLHVYRKNFVVYIEWIQRDKANGAS 331
+K R+YE GQ +GK L+ + + V+ + W RD AS
Sbjct: 52 SKVRIYEVQATGQSIGKALYEH-QGPVLSVNW-SRDGTKVAS 91
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 6.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 121 PTSTYVSTTLQRVKTTVQREIYANSSKDDEVQVVRGHYKG 240
PTS ++ QRV+ + +YA D+E + ++ Y G
Sbjct: 38 PTSFTLTEVSQRVQKLTKGAVYAIRVGDNEFEDIKAGYLG 77
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 24.6 bits (51), Expect = 8.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 76 RHEKQEEAFQCPFSHPTSTYVSTTLQRVKTTVQRE 180
R ++EE + HP+ TY TT K +RE
Sbjct: 971 RERREEEERENDEDHPSRTYKRTTKSITKRQQRRE 1005
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 24.6 bits (51), Expect = 8.3
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -1
Query: 417 AVRSRIVLRSLVIFNVTITHFEGW-IPM 337
A SRI L S ++ ++ IT F GW +PM
Sbjct: 470 ATDSRIELMSELLQSIRITKFFGWELPM 497
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 8.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 136 VSTTLQRVKTTVQREIYANSSKDDEVQVVRGHYKGP 243
V TTL ++ + I +S DDEVQ + +YK P
Sbjct: 467 VFTTL-KITSKSLHNIDEHSDSDDEVQPICYYYKDP 501
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 24.6 bits (51), Expect = 8.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 34 KNDRMKYNKLVTSSRHEKQEEAF 102
KNDR + TS RH++++E F
Sbjct: 180 KNDRFDVIIVDTSGRHQQEQELF 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,177,923
Number of Sequences: 5004
Number of extensions: 43775
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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