Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K20
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0323 - 2459854-2460306                                          133   6e-32
01_01_0263 + 2136858-2137331                                          130   5e-31
11_01_0317 - 2365493-2365786,2365825-2365953                          114   4e-26
09_03_0216 - 13529869-13530894                                         30   0.89 
08_02_0873 + 22100124-22100810                                         30   1.2  
05_07_0154 - 28059097-28060641                                         30   1.2  
11_06_0130 - 20408835-20411771                                         29   1.6  
03_05_0319 - 23064997-23065443                                         28   3.6  
03_05_0317 - 23056409-23056855                                         28   3.6  
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113...    28   4.7  
03_05_1145 - 30726506-30726917,30727000-30727167,30727823-30728685     27   6.3  
07_01_0950 + 7998616-7999728,7999821-7999970                           27   8.3  

>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  133 bits (322), Expect = 6e-32
 Identities = 69/134 (51%), Positives = 94/134 (70%)
 Frame = +2

Query: 83  KSRKRHFSAPSHIRRVLMSAPLSKELRQQFNVKSMPIPAKTTKCRLYEDIIKGQQVGKVL 262
           K RK HF+APS +RRVLMSA LS ELR ++NV+S+PI  K  + ++     KG++ GKV+
Sbjct: 13  KCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPI-RKDDEVQVVRGSYKGRE-GKVV 70

Query: 263 HVYRKNFVVYIEWIQRDKANGASVYIGIHPSKCVIVTLKMTNDRKTILDRTASGRLPALG 442
            VYR+ +V+++E I R+K NG++V +GIHPSK V+  LK+  DRK ILDR ASGR  A  
Sbjct: 71  QVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AAD 128

Query: 443 KDNGKYSEETAATA 484
           K  GK++ E  A A
Sbjct: 129 KAKGKFTAEDVAAA 142


>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  130 bits (315), Expect = 5e-31
 Identities = 67/134 (50%), Positives = 93/134 (69%)
 Frame = +2

Query: 83  KSRKRHFSAPSHIRRVLMSAPLSKELRQQFNVKSMPIPAKTTKCRLYEDIIKGQQVGKVL 262
           K RK HF+APS +RRVLMSA LS ELR ++NV+S+PI  K  + ++     KG++ GKV+
Sbjct: 13  KCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPI-RKDDEVQVVRGSYKGRE-GKVV 70

Query: 263 HVYRKNFVVYIEWIQRDKANGASVYIGIHPSKCVIVTLKMTNDRKTILDRTASGRLPALG 442
            VYR+ +V+++E I R+K NG++V +GIHPSK V+  LK+  DRK ILDR A GR  A  
Sbjct: 71  QVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AAD 128

Query: 443 KDNGKYSEETAATA 484
           K  GK++ +  A A
Sbjct: 129 KAKGKFTADDVAAA 142


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  114 bits (274), Expect = 4e-26
 Identities = 65/134 (48%), Positives = 85/134 (63%)
 Frame = +2

Query: 83  KSRKRHFSAPSHIRRVLMSAPLSKELRQQFNVKSMPIPAKTTKCRLYEDIIKGQQVGKVL 262
           K RK HF+APS +RRVLMSA LS ELR ++NV                   KG++ GKV+
Sbjct: 13  KCRKAHFTAPSSVRRVLMSAALSTELRHKYNV--------------VRGSYKGRE-GKVV 57

Query: 263 HVYRKNFVVYIEWIQRDKANGASVYIGIHPSKCVIVTLKMTNDRKTILDRTASGRLPALG 442
            VYR+ +V+++E I R+K NG++V +GIHPSK V+  LK+  DRK ILDR ASGR  A  
Sbjct: 58  QVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AAD 115

Query: 443 KDNGKYSEETAATA 484
           K  GK++ E  A A
Sbjct: 116 KAKGKFTAEDVAAA 129


>09_03_0216 - 13529869-13530894
          Length = 341

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +2

Query: 230 IIKGQQVGKVLHVYRKNFVVYIEWIQRDKANGASVYIGIHPSKCVIVTLKMTNDRKTIL 406
           ++ GQ+ G  +HV + N    +EW + D   G +++ G H S    + L+   +RK +L
Sbjct: 278 VLVGQR-GAPVHVVKLNENT-MEWDKVDSLQGRALFTGTHASMMKKIELEWMQNRKVLL 334


>08_02_0873 + 22100124-22100810
          Length = 228

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 350 GGYRCTHWLHWLCHAGSIRCRLQSSYGTHVILCP 249
           GG  C H     C AG +R +++S  G   + CP
Sbjct: 46  GGGGCAHAFCRACLAGHVRAKVESGGGAGAVRCP 79


>05_07_0154 - 28059097-28060641
          Length = 514

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +1

Query: 145 TLQRVKTTVQREI-YANSSKDDEVQVVRGHYKGP-AGGQSITCVP*ELCSLHRMDPA*QS 318
           TL R   T    I Y  +  + + +V RGH     A G    C      +L  ++P+ +S
Sbjct: 430 TLHRFGNTSSSSIWYELAYMEAKGRVRRGHRIWQIAFGSGFKCNSAVWHALRNVNPSPES 489

Query: 319 QWSQCVHRYP 348
            W  C+ RYP
Sbjct: 490 PWEDCIDRYP 499


>11_06_0130 - 20408835-20411771
          Length = 978

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 492 DSIAVAAVSSEYLPLSLPR-AGSLPLAVRSRIVLRSLVIFNVTIT 361
           DS++  + S  YL +   + +GSLP  + + I L SLV+FN ++T
Sbjct: 446 DSVSNLSSSLVYLSIGANKISGSLPRDIGNLINLESLVLFNNSLT 490


>03_05_0319 - 23064997-23065443
          Length = 148

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 QRRRSAGCTRTL*RASRWAKYYMCTVR 278
           +RRRS  C+RTL   S W++   CT R
Sbjct: 20  KRRRSGACSRTL---SAWSRSRRCTAR 43


>03_05_0317 - 23056409-23056855
          Length = 148

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 198 QRRRSAGCTRTL*RASRWAKYYMCTVR 278
           +RRRS  C+RTL   S W++   CT R
Sbjct: 20  KRRRSGACSRTL---SAWSRSRRCTAR 43


>02_01_0163 +
           1135592-1135623,1135718-1135816,1135904-1135960,
           1136053-1136116,1136174-1136392,1138562-1138945
          Length = 284

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 450 LSLPRAGSLPLAVRSRIVLRSLVIFNVTITHFEGWIPMYTLAPLA 316
           L+ P    L    +  I+L  L +F     +F  W+PMY+ A LA
Sbjct: 29  LNRPEVEQLRFWCQYWILLAVLTVFERVGDNFVSWLPMYSEAKLA 73


>03_05_1145 - 30726506-30726917,30727000-30727167,30727823-30728685
          Length = 480

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +2

Query: 92  KRHFSAPSHIRRVLMSAPLSKELRQQFNVKSMPIPAK-----TTKCRLYEDIIKGQQVGK 256
           K  F    H RR + +  +S+ +R +  + S+PIPAK         +L+  IIK    G+
Sbjct: 376 KGEFWVAIHCRRSIYARMVSRNVRLRKFLLSLPIPAKYHYLMQIGGKLHALIIKYNPEGE 435

Query: 257 VLHVYRKNFVVYIEWIQRDKANGASVYIG 343
           VL +        +  +   +     ++IG
Sbjct: 436 VLDILEDTTGQVVRAVSEVEEKDGKLWIG 464


>07_01_0950 + 7998616-7999728,7999821-7999970
          Length = 420

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 319 GFVTLDPFDVDYKVLTVHM*YFAHLLALYNVLVQPALRRLCWNWHRF 179
           G VT+D   +D  V+     +     +    L  PALRRLCW W +F
Sbjct: 265 GHVTVDAPALDELVVVCSTGWAVEYASF--TLRAPALRRLCW-WEQF 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,556,103
Number of Sequences: 37544
Number of extensions: 298071
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)