Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K20
         (495 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical pr...   122   1e-28
Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical p...    95   3e-20
Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical pr...    95   3e-20
U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>Z68315-8|CAA92674.1|  142|Caenorhabditis elegans Hypothetical
           protein F28C6.7a protein.
          Length = 142

 Score =  122 bits (295), Expect = 1e-28
 Identities = 62/130 (47%), Positives = 89/130 (68%)
 Frame = +2

Query: 83  KSRKRHFSAPSHIRRVLMSAPLSKELRQQFNVKSMPIPAKTTKCRLYEDIIKGQQVGKVL 262
           KSRK HF+APSH RR +MSAPL+KELR +  ++++PI     +  +     KG   G+VL
Sbjct: 13  KSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDD-EVVVMRGRHKGN-TGRVL 70

Query: 263 HVYRKNFVVYIEWIQRDKANGASVYIGIHPSKCVIVTLKMTNDRKTILDRTASGRLPALG 442
             YRK FV++I+ I R+KANG++V+IGIHPSK  I  LK+  DR+ +++R A+GR    G
Sbjct: 71  RCYRKKFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTG 130

Query: 443 KDNGKYSEET 472
              GK+++ET
Sbjct: 131 ILKGKHTDET 140


>Z68315-10|CAD59149.1|  109|Caenorhabditis elegans Hypothetical
           protein F28C6.7c protein.
          Length = 109

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 48/92 (52%), Positives = 66/92 (71%)
 Frame = +2

Query: 83  KSRKRHFSAPSHIRRVLMSAPLSKELRQQFNVKSMPIPAKTTKCRLYEDIIKGQQVGKVL 262
           KSRK HF+APSH RR +MSAPL+KELR +  ++++PI     +  +     KG   G+VL
Sbjct: 13  KSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDD-EVVVMRGRHKGN-TGRVL 70

Query: 263 HVYRKNFVVYIEWIQRDKANGASVYIGIHPSK 358
             YRK FV++I+ I R+KANG++V+IGIHPSK
Sbjct: 71  RCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>Z68315-9|CAA92678.1|  106|Caenorhabditis elegans Hypothetical
           protein F28C6.7b protein.
          Length = 106

 Score = 94.7 bits (225), Expect = 3e-20
 Identities = 48/92 (52%), Positives = 66/92 (71%)
 Frame = +2

Query: 83  KSRKRHFSAPSHIRRVLMSAPLSKELRQQFNVKSMPIPAKTTKCRLYEDIIKGQQVGKVL 262
           KSRK HF+APSH RR +MSAPL+KELR +  ++++PI     +  +     KG   G+VL
Sbjct: 13  KSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDD-EVVVMRGRHKGN-TGRVL 70

Query: 263 HVYRKNFVVYIEWIQRDKANGASVYIGIHPSK 358
             YRK FV++I+ I R+KANG++V+IGIHPSK
Sbjct: 71  RCYRKKFVIHIDKITREKANGSTVHIGIHPSK 102


>U64857-17|AAC25865.1|  161|Caenorhabditis elegans Hypothetical
           protein C37C3.11 protein.
          Length = 161

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 82  EKQEEAFQCPFSHPTSTYVSTTLQRVKTTVQREIYANSSKDDEVQV 219
           +KQ  A+ C FS   ST +   LQ + + +   +Y    + D V V
Sbjct: 9   QKQPSAYMCSFSLYASTVIMAVLQTILSALLAILYRVKIEGDSVIV 54


>Z68297-2|CAA92594.3|  522|Caenorhabditis elegans Hypothetical
           protein F11A10.3 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 261 NTLPTCWPFIMSSYNLHFVVF 199
           NT PTC  FI  S+  H+V +
Sbjct: 336 NTCPTCGTFIHGSHPTHYVTY 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,265,107
Number of Sequences: 27780
Number of extensions: 253908
Number of successful extensions: 727
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)