Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_K18
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 179 3e-46
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 179 3e-46
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.2
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 1.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.7
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 3.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 4.9
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 6.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 8.6
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 179 bits (435), Expect = 3e-46
Identities = 84/164 (51%), Positives = 119/164 (72%)
Frame = -3
Query: 610 VSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI 431
VSLADLQ D E SFRK +L ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN
Sbjct: 68 VSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQ 125
Query: 430 DVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVV 251
+KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I ++E+V
Sbjct: 126 TIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELV 185
Query: 250 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 119
KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+
Sbjct: 186 QKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLL 229
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 179 bits (435), Expect = 3e-46
Identities = 84/164 (51%), Positives = 121/164 (73%)
Frame = -3
Query: 610 VSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI 431
VSLADLQ D E +FRK +L ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+
Sbjct: 68 VSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQ 125
Query: 430 DVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVV 251
+KTTDGY+ RVF IGFT + +KT YAQ +Q+RAIR+KM ++I +S +RE+V
Sbjct: 126 TIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELV 185
Query: 250 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 119
KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+
Sbjct: 186 QKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLL 229
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -3
Query: 298 EIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 167
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 547 IAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 416
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 3.7
Identities = 33/126 (26%), Positives = 47/126 (37%)
Frame = -1
Query: 564 SASSDLSLRMSRDVMFSAISTAWTSPLINSDGW*RNGRHXXXXXXXXXXXTDMSYVFSAS 385
S+SS S S S+ S++ +SP S + + MS S S
Sbjct: 275 SSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI-SSSSSSSSSFSSTLSSSSMSSSSSFS 333
Query: 384 VSPTRIRSANARHATLSIPKSAQSGKKCVKSSRAM*PVQSFVKS*TS*FLTPSLRISKRR 205
SPT S + ++ S S KSS + S S +S LT S S R
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393
Query: 204 VTVSTH 187
+ S+H
Sbjct: 394 ASSSSH 399
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 394 FCIGFTNKDTLSQRKTCY 341
FC G NKDT+ K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 517 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 344
L + + + +T +++++ + N + K YV ++ G NK+T S RKTC
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTC 1742
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 496 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 398
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = -3
Query: 475 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTCYA 338
++ W L+ T GYV+R GFT+ + + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,276
Number of Sequences: 5004
Number of extensions: 48325
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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