Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K18
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   208   2e-54
U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical pr...    31   0.49 
AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine re...    29   3.5  
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  208 bits (509), Expect = 2e-54
 Identities = 105/196 (53%), Positives = 136/196 (69%)
 Frame = -3

Query: 610 VSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANI 431
           VSL DL   +++E  FRKF+LIAEDVQG+NVL NFH M +T DKL  +VKKW TLIEAN 
Sbjct: 67  VSLGDL---NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANT 123

Query: 430 DVKTTDGYVLRVFCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVV 251
            VKTTDGY LRVF I FT K     +KT Y + +++R IR +M   I ++VT  +L+EVV
Sbjct: 124 AVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVV 183

Query: 250 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMXXXXXXXXXXXXXXGD 71
           +KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L               G+
Sbjct: 184 SKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRL--HDLHGDSITVGADGE 241

Query: 70  KSERPEGYEPPVQESV 23
           K +RP+ YEPPVQ+ V
Sbjct: 242 KVDRPDDYEPPVQQEV 257


>U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.4 protein.
          Length = 308

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 113 QLHQLGDFKTRPLQYFHLPNADITKWVDTVT 205
           QLHQ+   +  PLQ+ H PN D+   +D  T
Sbjct: 59  QLHQINSAEQSPLQFTHQPNCDLIVVLDEQT 89


>AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 32 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 417 VVLTSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISL 554
           V +  ++ ++ V H F+ H  L V   +PW    T R   + AISL
Sbjct: 60  VYIIFVILTMEVPHLFSNHRGLIVTLGLPWSNFATCRSAIALAISL 105


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 491 EVHAVEIAENITSLDILSDKSELAE 565
           E+H +E AE++ SL +L  KSE+ +
Sbjct: 63  EMHIIEPAEHMKSLKVLMQKSEIEQ 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,361,347
Number of Sequences: 27780
Number of extensions: 282205
Number of successful extensions: 826
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)