Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K15
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   2.3  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    25   5.4  
SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces pomb...    25   5.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   5.4  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    25   7.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   7.1  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   7.1  

>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 447 SEIKYSFSYSGQTKWQPSVRSFQEFL*HLRIHAPC 343
           SEI YSFS S  +K  P+ + F+    H R+H  C
Sbjct: 905 SEISYSFSKSFLSKHFPNNKFFE----HARLHMHC 935


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -2

Query: 341 IIFNTLMQNNETISRKTQSKLITYIGIKWSKKNTRQTKMPPKKCLFIGYESVFDNLLRAL 162
           +++     NN++IS    +  I  I I     N   +K+P KKC    Y  +  +  +  
Sbjct: 682 VMWKPAQLNNDSISSMALATPIGAIRIHLRSANNLHSKIPGKKC--DSYARIMSHNTKQF 739

Query: 161 NTSSLGANL 135
            T  + +N+
Sbjct: 740 RTVVIASNV 748


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 115 LFEY*NKRFAPKELVFNARNKLSKTLS*PIKRHF 216
           LF+Y  +RF+PK +   A+  +++  S   +RHF
Sbjct: 98  LFDYCGRRFSPKTVAMIAKQMITRIQS-VHERHF 130


>SPAPB24D3.06c |||DUF1749 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 359 EYTLRVIIFNTLMQNNETISRKTQSKLITYIG 264
           EYT R++ F  + ++N T++      L+ ++G
Sbjct: 11  EYTERLVAFELVGKSNVTLTSNVTRSLLLFVG 42


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 492 LFVSKGRRYLNHAAKSEIKYSFSYSGQTKW 403
           L +  G  Y+NH+A   + + +S   Q+ W
Sbjct: 861 LIMQDGDLYINHSAPGAVLFRYSTDFQSHW 890


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 214 FFGGILVCRVFFLLHF----IPMYVINFDC 291
           +FGG+++   FF+LH     +P + + F C
Sbjct: 354 YFGGVILHNAFFILHVSLGEVPDFHLLFHC 383


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 7/37 (18%), Positives = 21/37 (56%)
 Frame = +1

Query: 169 RNKLSKTLS*PIKRHFFGGILVCRVFFLLHFIPMYVI 279
           R +  +TL   ++ HF+   +   + ++ H++P +++
Sbjct: 629 RQRGIRTLPETVRNHFYRSTMFFYMTYVFHYLPFFIM 665


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 344 HGACILRCYKNS*KLLTE 397
           HGA ILR YK + KLL +
Sbjct: 183 HGAIILRTYKKNKKLLPD 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,567
Number of Sequences: 5004
Number of extensions: 47334
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)