Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K15
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0179 + 14801037-14801108,14801325-14802788                       30   1.3  
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294...    27   7.2  
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497...    27   7.2  

>07_03_0179 + 14801037-14801108,14801325-14802788
          Length = 511

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 314 NETISRKTQSKLITYIGIKWSKKNTRQTKMPPKKCLFIGYESVFD-NLLRALNTSSLGAN 138
           ++ + ++T  KL T +  +W ++    ++    +C  +    +   NL+RAL+  S GAN
Sbjct: 180 DKAMLKETMKKLTTIMSNEWLREGELSSESIQIRCPSLSITCLIGGNLVRALDNPSAGAN 239

Query: 137 LL 132
           ++
Sbjct: 240 II 241


>05_05_0192 -
           23128460-23128502,23129130-23129216,23129299-23129443,
           23130812-23130872,23131046-23131164,23131320-23131374
          Length = 169

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 320 QNNETISRKTQS-KLITYIGIKWSKKNTRQTKMPPK 216
           +N   +SR   S  +I   G +WSK+N  Q K+PP+
Sbjct: 129 ENLSLVSRHALSLHVIDTEGCEWSKQNWLQRKIPPQ 164


>03_05_0861 -
           28348669-28348711,28349471-28349557,28349640-28349784,
           28350832-28350900,28351147-28351207,28351375-28351493,
           28351659-28351713
          Length = 192

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 320 QNNETISRKTQS-KLITYIGIKWSKKNTRQTKMPPK 216
           +N   +SR   S  +I   G +WSK+N  Q K+PP+
Sbjct: 152 ENLSPVSRHALSLHVIDTEGCEWSKQNWLQRKIPPQ 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,660,843
Number of Sequences: 37544
Number of extensions: 254201
Number of successful extensions: 511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)