Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K15
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50072-2|AAQ01530.1|  367|Caenorhabditis elegans Hypothetical pr...    30   0.91 
AF016439-1|AAB65898.3|  721|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z72503-2|CAA96598.1|  136|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine rece...    27   8.5  
U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine rece...    27   8.5  

>U50072-2|AAQ01530.1|  367|Caenorhabditis elegans Hypothetical
           protein K06B9.4 protein.
          Length = 367

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
 Frame = -2

Query: 371 CNI*EYTLRVIIFNTLMQNNE--TISRKTQSKLITYIGIKWS-KKNTRQTKMPPKKCLFI 201
           C+I +YT     F++ +Q +    I  KT+ ++I   GI+WS KK++  ++M P+K    
Sbjct: 32  CHIEDYTPPQ--FDSFLQLSACYNIGEKTEDEVINSDGIRWSKKKDSLGSEMKPRKNTI- 88

Query: 200 GYESVFDNLLRALNTSS 150
              SV     R +N SS
Sbjct: 89  ---SVDGRTFRRINCSS 102


>AF016439-1|AAB65898.3|  721|Caenorhabditis elegans Hypothetical
           protein R02F11.2 protein.
          Length = 721

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 338 IFNTLMQNNETISRKTQSKLITYIGIKWSKKNTRQTKMPPKKCLF 204
           +++TL  +NE +S+     L +   + W  K  +  KM    CLF
Sbjct: 379 VWDTLQPDNEKLSQSCAVLLASRSTVTWGGKFWQPAKMDDNNCLF 423


>Z72503-2|CAA96598.1|  136|Caenorhabditis elegans Hypothetical
           protein C26C6.6 protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 23  KAKNMCQDRSKWKDVFLCLPIWVRGVTLCIYCLNIKIKDSR 145
           KAK   +D  K K VF    +W R    CI+C  ++I D+R
Sbjct: 12  KAKIAEEDVEKNKVVFFLNRMWHRDHIQCIFC-KLQISDNR 51


>U00033-3|AAC48304.2|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 9 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +2

Query: 113 YCLNIK-IKDS-RLKSLYSTPVINYQKHFHNL*RDTFLAAS*SVVYFFYSILFLCMLLIL 286
           +  NIK I+D+ +LKS+ ST    +Q        + + +    +   FY + F C  +IL
Sbjct: 212 FLFNIKLIRDNAKLKSINSTLSTKFQLE------EVYFSTMFVITVVFYHVAFFCSYIIL 265

Query: 287 IVFYVI 304
           ++ +++
Sbjct: 266 VLTFLV 271


>U00033-2|AAP68944.1|  351|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 8 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +2

Query: 113 YCLNIK-IKDS-RLKSLYSTPVINYQKHFHNL*RDTFLAAS*SVVYFFYSILFLCMLLIL 286
           +  NIK I+D+ +LKS+ ST    +Q        + + +    +   FY + F C  +IL
Sbjct: 212 FLFNIKLIRDNAKLKSINSTLSTKFQLE------EVYFSTMFVITVVFYHVAFFCSYIIL 265

Query: 287 IVFYVI 304
           ++ +++
Sbjct: 266 VLTFLV 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,587,203
Number of Sequences: 27780
Number of extensions: 263545
Number of successful extensions: 660
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)