Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K15
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.0  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 308 TISRKTQSKLITYIGIKWSKKNTRQTKMP 222
           T    T S L+T I I W+ +  R  +MP
Sbjct: 303 TFIMNTVSILVTVIIINWNFRGPRTHRMP 331


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 263 IKWSKKNTRQTKMP 222
           +KW K+N R T  P
Sbjct: 61  MKWKKENARATGTP 74


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 383 KLLTEGCHFV*PLYEKLYLISDL 451
           +L   GC  + PLY+ L LI ++
Sbjct: 309 ELQLPGCEVLCPLYKYLQLIENV 331


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 383 KLLTEGCHFV*PLYEKLYLISDL 451
           +L   GC  + PLY+ L LI ++
Sbjct: 324 ELQLPGCEVLCPLYKYLQLIENV 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,747
Number of Sequences: 438
Number of extensions: 3316
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)