Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K14
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    28   1.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   1.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.2  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.2  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   7.2  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 47  FTVDSVLSAHTTANNNLYIWEVCVTHYRRK 136
           F  DS+LS    +  ++Y W++ +TH   K
Sbjct: 261 FITDSILSLLMCSTRSVYPWDIVITHQSGK 290


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +1

Query: 385 RYDSLSHRRAIRLCTLEPGQQQMRMSLCLVRRRNAGVSKIMVH 513
           +Y++LS R   R   L+P  ++++  LC+ +RRNA   +I+ H
Sbjct: 168 QYETLSMRTRYRHY-LDPAIEEVK-KLCIGQRRNAKEERILFH 208


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 324 INNLKCSAVYGNRTDYSLFLILTDHKH*VRQHISVTG 214
           +N  +C+A   + TD  L ++L  H + V     VTG
Sbjct: 656 LNGSRCTAGVRSLTDGGLLVLLNGHSYTVYYRDEVTG 692


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 187 LWLYESVVVACYAYVLAN 240
           +W+Y S++V C+   L N
Sbjct: 586 IWIYASLLVTCFVLALGN 603


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 447 LLPRLQCTQPNSSPVGK*IVTVTSFLYGVNTKKDIHTRNNTINNLKCSA 301
           L+ R Q   P   PV    VTVTS+  G+NT + +      I+ L  +A
Sbjct: 676 LIARDQMVGPWQVPVADVGVTVTSYGKGINTGEALAMGEKPISALVSAA 724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,405
Number of Sequences: 5004
Number of extensions: 40611
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)