Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K14
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076...    29   2.3  
06_01_0218 + 1647624-1647757,1648044-1648112,1648493-1648549,164...    28   4.1  
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    28   5.4  
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863...    28   5.4  
01_06_1650 - 38904543-38904662,38904940-38905014,38905100-389051...    28   5.4  
05_03_0024 - 7459352-7459765                                           27   7.2  
07_03_1450 + 26620178-26620456,26622122-26622775                       27   9.5  

>11_06_0211 +
           21305535-21305895,21306512-21306761,21307543-21307652,
           21308836-21309067,21310233-21310603,21311434-21311507,
           21311727-21311880,21312251-21312434,21313066-21313291,
           21313704-21314135,21314399-21314456,21314748-21314829,
           21315350-21315421,21316594-21316737,21317379-21317457,
           21318023-21318105,21318198-21318252,21318488-21318778
          Length = 1085

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 23  SAAGSAITFTVDSVLSAHTTANNNLYIWEVCVTHYRR 133
           S A S+  F+VDS L+ H  A NN+   E  + H  R
Sbjct: 686 SRAESSTAFSVDSQLNPHIFAENNMSFTEEPLKHIAR 722


>06_01_0218 +
           1647624-1647757,1648044-1648112,1648493-1648549,
           1648768-1648934,1649661-1649716,1650319-1650490,
           1650747-1650810,1651037-1651119,1651243-1651334,
           1652028-1652134,1652398-1652461,1652630-1652770
          Length = 401

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 23  SAAGSAITFTVDSVLSAHTTANNNLYIWEV 112
           SA+ +A+TF+ DS L A  +A+  + +WE+
Sbjct: 353 SASCNAVTFSSDSKLLASCSADTTVALWEL 382


>06_01_0007 +
           130582-131544,132187-132264,132615-132732,133228-133271,
           133389-133448,133536-133588,133671-133837,133963-134167,
           134989-135046,135225-135281,135363-135608,135938-136002,
           136090-136158,136238-136331,136467-136607,137159-137304,
           137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +1

Query: 352 FCVNTVKERCHRYDSLSHRRAIRLCTLEPGQQQMRMSLCLVRRRNAGVSKIMVHC 516
           FCVN    + +    L H   +R     PG     +  CL+R+ +  +    ++C
Sbjct: 361 FCVNVALSQNNIKIPLPHLMLVRAIPGTPGYTNWSLKFCLMRKVDGYIKDQRIYC 415


>01_06_1742 -
           39585879-39585994,39586089-39586238,39586288-39586375,
           39586479-39586640,39586753-39586877,39586992-39587030,
           39587290-39587476,39587643-39587713,39589371-39589564,
           39589656-39589767,39589899-39590082,39590177-39590503,
           39590780-39591061,39591148-39591621,39591730-39591813,
           39591850-39591939,39592024-39592247,39592503-39592600,
           39592679-39593169,39593249-39593520,39594266-39594522,
           39594672-39594890,39595007-39595167,39595249-39595441,
           39595528-39595633,39595947-39596121,39596404-39596556,
           39596663-39596794,39597120-39597184,39597754-39597819,
           39598433-39598511,39598587-39598767,39598864-39598976
          Length = 1889

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 319 IDSVISRVNIFFCVNTVKERCHRYDS 396
           I +V  R  I FCV + KE C  YDS
Sbjct: 169 IYTVSDREEIEFCVPSAKEMCRYYDS 194


>01_06_1650 -
           38904543-38904662,38904940-38905014,38905100-38905164,
           38905955-38906037,38906135-38906205,38906385-38906459,
           38906702-38906783,38906869-38906933,38907202-38907312,
           38907394-38907494,38908514-38908619
          Length = 317

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 381 TSFLYGVNTKKDIHTRNNTINNLKCSAVYGNRTD 280
           TSFL G  + + I  R + +N  KC+ +  N  D
Sbjct: 29  TSFLNGSVSLRLIQVRQSNVNRFKCNGIRSNLLD 62


>05_03_0024 - 7459352-7459765
          Length = 137

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 204 RLIKPQRRRTSARRLHIHGLYDSLR 130
           R I P+R  TSA RLHI G   +LR
Sbjct: 17  RSIAPRRAATSALRLHITGDVSALR 41


>07_03_1450 + 26620178-26620456,26622122-26622775
          Length = 310

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 510 HHYL*HASVPPPY*AQRHSHLL 445
           HH+L   S+PPP  A  H HL+
Sbjct: 142 HHHLNPFSLPPPPPAYHHHHLI 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,982
Number of Sequences: 37544
Number of extensions: 281251
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)