Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K14
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   3.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   6.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.0  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 280 LFIIPYSY*SQALGSPAHKRNRRRLQTHKATKASHIGSAPSHT 152
           LF+I YSY        AH++N R  Q  K   AS   S   +T
Sbjct: 229 LFLIIYSYWFIIQAVAAHEKNMRE-QAKKMNVASLRSSENQNT 270


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 330 NTINNLKCSAVYGNRTD 280
           NT+ NL C+ V G+  D
Sbjct: 681 NTMENLTCATVKGSAVD 697


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 280 LFIIPYSY*SQALGSPAHKRNRRRLQTHKATKASHIGSAPSHT 152
           LF+I YSY        AH++N R  Q  K   AS   S   +T
Sbjct: 105 LFLIIYSYWFIIQAVAAHEKNMRE-QAKKMNVASLRSSENQNT 146


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 463 LCLVRRRNAGVSKIMVHCL 519
           + LV   N+G+ K ++ CL
Sbjct: 9   VALVTGANSGIGKCLIECL 27


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 86  NNNLYIWEVCVTHYRRKES 142
           ++ LY+ E C   YR K S
Sbjct: 32  SDTLYVCEFCNRRYRTKNS 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,550
Number of Sequences: 438
Number of extensions: 3074
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)