Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_K12
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 303 1e-83
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 181 9e-47
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 174 8e-45
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 136 2e-33
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 2.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 3.0
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 26 3.9
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 3.9
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.2
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 6.9
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 9.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 303 bits (744), Expect = 1e-83
Identities = 141/204 (69%), Positives = 161/204 (78%)
Frame = +1
Query: 10 WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYP 189
WAKGHYTEGAEL D+VLDVVR+EAE+CD LQGFQ KIREEYP
Sbjct: 101 WAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYP 160
Query: 190 DRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTP 369
DR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL I TLK+ +P
Sbjct: 161 DRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSP 220
Query: 370 TYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQ 549
+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS
Sbjct: 221 SYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSS 280
Query: 550 YRALTVPELTQQMFDAKNMMAACD 621
++A++VPELTQQMFDA NMM A D
Sbjct: 281 FQAVSVPELTQQMFDANNMMVAAD 304
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 181 bits (440), Expect = 9e-47
Identities = 81/207 (39%), Positives = 124/207 (59%)
Frame = +1
Query: 1 ARGWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRE 180
+ +A+GHYT G E++DSVL+ +R+ A++C LQGF ++
Sbjct: 104 SNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNM 163
Query: 181 EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKL 360
EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R L +
Sbjct: 164 EYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDI 223
Query: 361 STPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 540
PTY +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P+ S
Sbjct: 224 ERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAA 283
Query: 541 SQQYRALTVPELTQQMFDAKNMMAACD 621
+ + +V E+T Q F+ N M CD
Sbjct: 284 KAFHESNSVQEITNQCFEPYNQMVKCD 310
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 174 bits (424), Expect = 8e-45
Identities = 80/207 (38%), Positives = 120/207 (57%)
Frame = +1
Query: 1 ARGWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIRE 180
+ +A+GHYT G ELVD V D +R+ A++C LQGF ++
Sbjct: 100 SNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAM 159
Query: 181 EYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKL 360
EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R L +
Sbjct: 160 EYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDI 219
Query: 361 STPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG 540
P+Y +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+ S
Sbjct: 220 ERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAA 279
Query: 541 SQQYRALTVPELTQQMFDAKNMMAACD 621
+ + +V E+T Q F+ N M CD
Sbjct: 280 KAFHESNSVQEITNQCFEPYNQMVKCD 306
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 136 bits (329), Expect = 2e-33
Identities = 68/206 (33%), Positives = 110/206 (53%), Gaps = 4/206 (1%)
Frame = +1
Query: 10 WAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYP 189
WA G Y+ + + ++D++ +EA+ D L+GF ++ + YP
Sbjct: 104 WANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYP 162
Query: 190 DRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLST 366
+I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN AL I L
Sbjct: 163 KKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQN 222
Query: 367 PTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQ 546
PT+ N LVS MS TT LR+PG +N DL + +++P PR HF + + P T++ +
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVE 282
Query: 547 QYRAL---TVPELTQQMFDAKNMMAA 615
+ +A+ TV ++ +++ KN M +
Sbjct: 283 EAKAIRKTTVLDVMRRLLLPKNQMVS 308
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 95 VYKD-SNSHTPSEAVLAPVWAPFSSLKY 175
VYK S HT S L +W PFS L Y
Sbjct: 238 VYKTISPLHTQSTDKLYTIWTPFSELHY 265
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +1
Query: 280 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 459
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 460 RKLAVNMV 483
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 13 AKGHYTEGAELVDSVLDVVRKEAESCDCLQ 102
A+GH G ELV + D +RK++E+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 358 VSACGSRCHRGLHC 317
VSAC CH+GL C
Sbjct: 210 VSACAFACHKGLSC 223
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 358 VSACGSRCHRGLHC 317
VSAC CH+GL C
Sbjct: 207 VSACAFSCHKGLGC 220
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 298 LCFLLTDVPKVWH 260
L FLLTD+ K+WH
Sbjct: 661 LRFLLTDLTKIWH 673
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 295 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 399
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,943
Number of Sequences: 5004
Number of extensions: 55751
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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