Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_K11
         (90 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0496 - 18758767-18760113                                         25   6.3  
05_07_0240 + 28606345-28607316                                         25   6.3  
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956...    25   6.3  
03_04_0083 - 17146422-17148068                                         25   6.3  
12_02_0687 + 22123216-22123760,22125021-22125330                       25   8.3  
06_03_0955 + 26293201-26293296,26293403-26293543                       25   8.3  
01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168     25   8.3  

>07_03_0496 - 18758767-18760113
          Length = 448

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 84  DLADARYGRPTIDAIRPVLRE 22
           DLAD + G+PT+ ++  ++R+
Sbjct: 214 DLADDKDGKPTVTSVERIIRQ 234


>05_07_0240 + 28606345-28607316
          Length = 323

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 36  GGWRLWLVAHSAHPPGPP 89
           G W +W +  S  PP PP
Sbjct: 261 GAWYMWRLIESKAPPPPP 278


>04_04_1641 +
           34993807-34994589,34994924-34995022,34995521-34995648,
           34996095-34996235,34996456-34996542,34996627-34996780,
           34998569-34998628,34999019-34999447,34999524-34999819,
           35000278-35000407,35000690-35001187
          Length = 934

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 6   RASPSTPGGPGGWRLWLVAHSAHPP 80
           R SPS P  P   +LWL +  + PP
Sbjct: 57  RPSPSPPPNPLSSKLWLSSKLSPPP 81


>03_04_0083 - 17146422-17148068
          Length = 548

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 82  PGGCALWATNH-RRHPPGPPG 23
           PGG A WA +  RR PPG PG
Sbjct: 43  PGGPA-WALSRCRRPPPGAPG 62


>12_02_0687 + 22123216-22123760,22125021-22125330
          Length = 284

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 88  GGPGGCALWATNHRRHPPGPPGVDGEA 8
           GG GG  +   NH R+  G P VDG A
Sbjct: 56  GGGGGAKMPHVNHGRYKCG-PWVDGHA 81


>06_03_0955 + 26293201-26293296,26293403-26293543
          Length = 78

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 40 PPGPPGVDGE 11
          PP PPG+DGE
Sbjct: 62 PPEPPGIDGE 71


>01_06_1130 + 34740301-34740551,34740657-34741763,34741865-34742168
          Length = 553

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 3   TRASPSTPGGPGGW 44
           T ASP  P GP GW
Sbjct: 303 TPASPKLPEGPSGW 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,260,536
Number of Sequences: 37544
Number of extensions: 68816
Number of successful extensions: 357
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 11
effective length of database: 14,380,364
effective search space used: 258846552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)